Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01924 ATGCAAAAGGAGAGTCCTCCTAATCTCCGTCGTTTTGGTCATCGCCATGCGTGGCTTGCTTTGTTACTTGTTCTTCTCATGCAGATCTCACCGCCAACAACCGCTCAACCGGTAGCACCGGAAGTGGACCCGGAGAATAATAAATCCGTGGCTACCATCATGGGGATCGTCGCTCTTATGTTCCTTGTCTCAGGTTTTCTTTCCCTCTACTCCGGCAAATGCACCGAGCGGCAAGGAGTGAGGCTAGACCTCACTTTTCCAAACGCAGCCGATCGCCGGCAACAAAACGAGCCATGCGTTGGTCTCAATCAAGAGGTGATCGACACATTCCCAACATTTCTCTACTCCAACGTGAAGGGACTCAAGATCGGCAAAGGCACATTAGCATGCGCAGTATGCTTGAACGAGTTCGAAGACGACGAGACTCTTCGTATGATCCCCAAATGCAGCCACGTGTACCACCCGAACTGCATCGATTCATGGCTAGCCTCTCACATCACCTGCCCACTCTGCCGCGCCAATCTCATCCCAAGACCCGACGACACCACCACCACCCTCCCTCCAACCACCGTCTCCATTCAAATGCCAGAAGATCATGAATTACAGTTACACCACCCAAACGAACAAGCACCAGAACAAGAAGAAGATGACGCTATTCGTGATAATACAGTACAGGACCACAAGCGAGTAGATGACGTGGAATCAGTATCACCACCGAAGTTTGATTTTCTTCGTCGGTGTCGCACTATGAATTTCCAGAACCGTCCTCCAACACGGTCGAGATCTACTGGTTTTTTGTCTTCTCTATGGTTTTCGAGGTCAAATTCAATGGCTGATAATCGTCATCCGTCGGTGTTGGTGCAGCAAGGTGAGAATTGTGAGAGGTTTACTCTGAGGTTACCTGATGAGGTTCGAAGCCAGATGCTGAAGCGTGCGAATAGCTGCGTGAGTTTTACGAGAATGAGTAGTGGCACGTGGGGTTATAGGACGAGAAGTGTAGGGAGTGGTGGACACGCGCGGGGTGGTGGTTGTGTGCAGTATGAGAGGTTTGGGAGTCATGAGGAGCAGTGGGGGTTCAGTTTGACGCCACCGAGTTTTGTTAGAAACGGTTGGAATAGGTCTTCTAGAAAAAGCTCTGATCATTTGGGAGTGGCTTTGGATAATAATGTTGGTGAGCGATCCTCTGATCATTTGTGTCCTGGGTAG 1206 0.5 MQKESPPNLRRFGHRHAWLALLLVLLMQISPPTTAQPVAPEVDPENNKSVATIMGIVALMFLVSGFLSLYSGKCTERQGVRLDLTFPNAADRRQQNEPCVGLNQEVIDTFPTFLYSNVKGLKIGKGTLACAVCLNEFEDDETLRMIPKCSHVYHPNCIDSWLASHITCPLCRANLIPRPDDTTTTLPPTTVSIQMPEDHELQLHHPNEQAPEQEEDDAIRDNTVQDHKRVDDVESVSPPKFDFLRRCRTMNFQNRPPTRSRSTGFLSSLWFSRSNSMADNRHPSVLVQQGENCERFTLRLPDEVRSQMLKRANSCVSFTRMSSGTWGYRTRSVGSGGHARGGGCVQYERFGSHEEQWGFSLTPPSFVRNGWNRSSRKSSDHLGVALDNNVGERSSDHLCPG. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01924 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 177 IPR013083 -
Seca8g01924 401 CDD RING-H2_EL5-like 130 172 - -
Seca8g01924 401 Pfam Ring finger domain 129 172 IPR001841 -
Seca8g01924 401 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Seca8g01924 401 SMART ring_2 130 171 IPR001841 -
Seca8g01924 401 SUPERFAMILY RING/U-box 124 179 - -
Seca8g01924 401 FunFam E3 ubiquitin-protein ligase ATL6 89 178 - -
Seca8g01924 401 PANTHER RING FINGER DOMAIN-CONTAINING 38 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01924 Seca-Chr8 39899998 39903033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01924 19 363 Rapid Response to Elicitors AT3G05200 33.613 4.90e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01924 K10664 - gmx:100814384 397.127