LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g01923	ATGGGCATCCACACCGTATGTCCTGCACCTGCACCTGCACCAACACTCTTCCTACTGTGTAATTTTGTTCATGGCCGTGCCTTGTCCCTTTTCCTTCTCTCTCTCATGCCGGCGGCAATGGCGCAGTTTGAAAACGCGGCGCCTCCGCCGCCGCCAGACCCATTCGCGAGGCTGAGGTTCGACAAAACCATGGCTGCGGTTCTTGTGATCCTCGTCGTGGTTTTCTTCTTATTGGGCTTTGTCTCTATCTACACTCGCCAATGTGCGGAGCGAAGGATCAGAGGGAGGCTCGACATCGCCGTTAACATCGTCGGCGGAAGCGGTCTCCGGCAGAATCGCGGCCTCGACCCGGAGATCATCGACACGTTCCCGACCTTCGTTTACTCTGACGTGAAGGGACTCAAGATAGGGAGGGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTTCGCGATGATGAAACGCTGCGTTTGATCCCCAAATGTAGCCACGTGTTCCACCCTGATTGCATCGATGTCTGGTTGGTTAATCACTCCACTTGCCCCGTTTGCAGGGCAAACCTCGTGCCTAAACCAGGTGACACGTCACCATCTTCTTCCGTCGCGATCCAAATCCCGGATCCGGGTTGTGGAAGACCCGTTTCACCAGAACACACACCCGATGTCATTATCCGGGTAGATTCTGATGAAGGTAGGAGAATAACAACGGAGTCTCCGAGGGTGAATTTAGATGAACCAAACCGTCCGGTTCGGTCGAGGTCAACCGGGTTTGGGTTCTCTAGATTGTTCCCGCGCTCTCACTCGACCGGTCACTCGCTGGTTCGACCGGGCGAGGATTGCGAGCGGTTCACGTTGAGGTTACCGGAGGAAGTGCGGGATCAGCTTGTGAATTCAGCGACATTGAGCCAAACGAAGAGTTGCGGAATGACATTGCAGAGAGAGAGGAGTGGGAGGAGGGGTTACAGGACGAGGAGTGTGGGGAGAAGTTATTTGCAGTACGAGCGGTTCGAAGGAGAGAGCCGCTCGGGCCGGTGGGGATTCAAGTGTACCCCGCCGTTTTTGGGCCGGTCCGGTTCGAGTAGATCTACTAAGGACGCCAACAAGGTATCGGTGGTGATGGATGAAGTCGAAGTGGGAGAACGTTCTTGTGATCGTTTTTTACCAATGGTTGACAATTAG	1179	0.5488	MGIHTVCPAPAPAPTLFLLCNFVHGRALSLFLLSLMPAAMAQFENAAPPPPPDPFARLRFDKTMAAVLVILVVVFFLLGFVSIYTRQCAERRIRGRLDIAVNIVGGSGLRQNRGLDPEIIDTFPTFVYSDVKGLKIGRATLECAVCLNEFRDDETLRLIPKCSHVFHPDCIDVWLVNHSTCPVCRANLVPKPGDTSPSSSVAIQIPDPGCGRPVSPEHTPDVIIRVDSDEGRRITTESPRVNLDEPNRPVRSRSTGFGFSRLFPRSHSTGHSLVRPGEDCERFTLRLPEEVRDQLVNSATLSQTKSCGMTLQRERSGRRGYRTRSVGRSYLQYERFEGESRSGRWGFKCTPPFLGRSGSSRSTKDANKVSVVMDEVEVGERSCDRFLPMVDN.	393

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g01923	392	CDD	RING-H2_EL5-like	142	185	-	-
	Seca8g01923	392	PANTHER	RING FINGER DOMAIN-CONTAINING	46	194	-	-
	Seca8g01923	392	ProSiteProfiles	Zinc finger RING-type profile.	143	185	IPR001841	-
	Seca8g01923	392	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	106	190	IPR013083	-
	Seca8g01923	392	SUPERFAMILY	RING/U-box	142	199	-	-
	Seca8g01923	392	SMART	ring_2	143	184	IPR001841	-
	Seca8g01923	392	FunFam	E3 ubiquitin-protein ligase ATL6	106	191	-	-
	Seca8g01923	392	Pfam	Ring finger domain	142	185	IPR001841	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g01923	Seca-Chr8	39798882	39800084	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g01923	30	381	Rapid Response to Elicitors	AT3G05200	40.426	4.65e-72	229

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g01923	K10664		-	gmx:100815982	461.07

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