Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01923 ATGGGCATCCACACCGTATGTCCTGCACCTGCACCTGCACCAACACTCTTCCTACTGTGTAATTTTGTTCATGGCCGTGCCTTGTCCCTTTTCCTTCTCTCTCTCATGCCGGCGGCAATGGCGCAGTTTGAAAACGCGGCGCCTCCGCCGCCGCCAGACCCATTCGCGAGGCTGAGGTTCGACAAAACCATGGCTGCGGTTCTTGTGATCCTCGTCGTGGTTTTCTTCTTATTGGGCTTTGTCTCTATCTACACTCGCCAATGTGCGGAGCGAAGGATCAGAGGGAGGCTCGACATCGCCGTTAACATCGTCGGCGGAAGCGGTCTCCGGCAGAATCGCGGCCTCGACCCGGAGATCATCGACACGTTCCCGACCTTCGTTTACTCTGACGTGAAGGGACTCAAGATAGGGAGGGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTTCGCGATGATGAAACGCTGCGTTTGATCCCCAAATGTAGCCACGTGTTCCACCCTGATTGCATCGATGTCTGGTTGGTTAATCACTCCACTTGCCCCGTTTGCAGGGCAAACCTCGTGCCTAAACCAGGTGACACGTCACCATCTTCTTCCGTCGCGATCCAAATCCCGGATCCGGGTTGTGGAAGACCCGTTTCACCAGAACACACACCCGATGTCATTATCCGGGTAGATTCTGATGAAGGTAGGAGAATAACAACGGAGTCTCCGAGGGTGAATTTAGATGAACCAAACCGTCCGGTTCGGTCGAGGTCAACCGGGTTTGGGTTCTCTAGATTGTTCCCGCGCTCTCACTCGACCGGTCACTCGCTGGTTCGACCGGGCGAGGATTGCGAGCGGTTCACGTTGAGGTTACCGGAGGAAGTGCGGGATCAGCTTGTGAATTCAGCGACATTGAGCCAAACGAAGAGTTGCGGAATGACATTGCAGAGAGAGAGGAGTGGGAGGAGGGGTTACAGGACGAGGAGTGTGGGGAGAAGTTATTTGCAGTACGAGCGGTTCGAAGGAGAGAGCCGCTCGGGCCGGTGGGGATTCAAGTGTACCCCGCCGTTTTTGGGCCGGTCCGGTTCGAGTAGATCTACTAAGGACGCCAACAAGGTATCGGTGGTGATGGATGAAGTCGAAGTGGGAGAACGTTCTTGTGATCGTTTTTTACCAATGGTTGACAATTAG 1179 0.5488 MGIHTVCPAPAPAPTLFLLCNFVHGRALSLFLLSLMPAAMAQFENAAPPPPPDPFARLRFDKTMAAVLVILVVVFFLLGFVSIYTRQCAERRIRGRLDIAVNIVGGSGLRQNRGLDPEIIDTFPTFVYSDVKGLKIGRATLECAVCLNEFRDDETLRLIPKCSHVFHPDCIDVWLVNHSTCPVCRANLVPKPGDTSPSSSVAIQIPDPGCGRPVSPEHTPDVIIRVDSDEGRRITTESPRVNLDEPNRPVRSRSTGFGFSRLFPRSHSTGHSLVRPGEDCERFTLRLPEEVRDQLVNSATLSQTKSCGMTLQRERSGRRGYRTRSVGRSYLQYERFEGESRSGRWGFKCTPPFLGRSGSSRSTKDANKVSVVMDEVEVGERSCDRFLPMVDN. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01923 392 CDD RING-H2_EL5-like 142 185 - -
Seca8g01923 392 PANTHER RING FINGER DOMAIN-CONTAINING 46 194 - -
Seca8g01923 392 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Seca8g01923 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 190 IPR013083 -
Seca8g01923 392 SUPERFAMILY RING/U-box 142 199 - -
Seca8g01923 392 SMART ring_2 143 184 IPR001841 -
Seca8g01923 392 FunFam E3 ubiquitin-protein ligase ATL6 106 191 - -
Seca8g01923 392 Pfam Ring finger domain 142 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01923 Seca-Chr8 39798882 39800084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01923 30 381 Rapid Response to Elicitors AT3G05200 40.426 4.65e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01923 K10664 - gmx:100815982 461.07