Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01905 ATGAGAAGATTCACGTGGTTAACGGCGTATCGGCGCTATTTGCATTCGTCTGTGGCCTCAGGACCTCTCGTTGATAGAAAGTCGTTCAGCAAATTCTTGTCGTCTCGCCAATCGTTGTTGTTCGCACGAGGCACGTTGCGATTTTCTCTTGCTTTTGGCATGCTGATTACCATTTCCACTTTGGTCAATTGCAGTTCTGTCACGAGAACGGAGGGGTCTTTATTTCTGAGAATTCCATTGAGATATCGTTATATTCAGGCGACAGCATTTTCGTCTTCCGCTGAACGAGACTATTATCGGATTCTTGGTGTTTCTGAAAATGCCAGTCAGGACGAGATAAAGAAGGCATTTCACTCGCTTGCTAAAAAATACCATCCAGATGCAAATAAGAATAATCCATCAGCAAAGAGGAAATTTCAAGATATAAGAGAAGCATATGAGACTTTGAGAGACTCTATAAAGAGGGCAGAGTATGACAGGATGCGTACTCATGGTTCAGAGAATGTAGAATATGGTGATGATGATACAGAAAGGTTTAGAAATGCTTATCGTTCTCATTTTTCTGATTCATTTCATAAAGTATTCTCTGAGATATTTGAAGAAGCAGCAACTCAGTTCTCATCAAATATAGAGGTGGAGTTGTCTCTTACTTTCTCAGAAGCTGCTAGAGGATGCACCAAATATGTGTCATTTGATGCGTCAGTTCCCTGTGATTATTGCAGATGGACAGGGCTATCCACTAAATGCCACCCCAAAAGTTTGTCCAACATGCAGAGGCTTAGGTCGAGTCACAATTCCGCCATTTACATCAACATGCATTACTTGTAA 828 0.4143 MRRFTWLTAYRRYLHSSVASGPLVDRKSFSKFLSSRQSLLFARGTLRFSLAFGMLITISTLVNCSSVTRTEGSLFLRIPLRYRYIQATAFSSSAERDYYRILGVSENASQDEIKKAFHSLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSIKRAEYDRMRTHGSENVEYGDDDTERFRNAYRSHFSDSFHKVFSEIFEEAATQFSSNIEVELSLTFSEAARGCTKYVSFDASVPCDYCRWTGLSTKCHPKSLSNMQRLRSSHNSAIYINMHYL. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01905 275 ProSitePatterns Nt-dnaJ domain signature. 139 158 IPR018253 -
Seca8g01905 275 PANTHER DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 87 259 - -
Seca8g01905 275 PRINTS DnaJ domain signature 134 154 IPR001623 -
Seca8g01905 275 PRINTS DnaJ domain signature 154 173 IPR001623 -
Seca8g01905 275 PRINTS DnaJ domain signature 99 117 IPR001623 -
Seca8g01905 275 PRINTS DnaJ domain signature 117 132 IPR001623 -
Seca8g01905 275 SUPERFAMILY Chaperone J-domain 93 189 IPR036869 -
Seca8g01905 275 ProSiteProfiles dnaJ domain profile. 97 162 IPR001623 -
Seca8g01905 275 Pfam DnaJ domain 97 159 IPR001623 -
Seca8g01905 275 SMART dnaj_3 96 154 IPR001623 -
Seca8g01905 275 Gene3D DnaJ domain 93 209 IPR036869 -
Seca8g01905 275 CDD DnaJ 97 151 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01905 Seca-Chr8 39409415 39413578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01905 91 164 C2H2 Transcription Factor Family AT1G74250 37.975 2.46e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01905 - - gmx:100799962 350.903