Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01882 ATGGAATTTGACGAGCAAGAAGAGCAAGAGGAGGAAATGGGGATCCCGGAGACGCCGCAACCGCCACCGGCGAGTTACGACTCGCTCGGAAACTCGGCGACCAGGACCAAACTAGCCGAGGGAACCGCGTCACGGAAGAGCGCGTTCGGGACGGTGAGGTATAGAGAATGTCAAAAGAATCACGCCGTAAGCTTCGGCGGCCACGCCGTCGACGGTTGCTGCGAGTTCATGGCTGCCGGAGAGGAAGGAACCCTAGAGGCCGTGATTTGCGCTGCCTGTAACTGTCACCGGAACTTCCACCGTAAGGAGATCGATGGCGAGACAGTGAGCTCTTGCCAGCGTCCACCGCAGCAACCGCCTCCTCCGCCGCAGATGTACCATCACCACCACCAATTCTCACCTTACTACCACCGCGGACCTCAGCACCACCCTGCCGCCGGCGCCGGTTACCTCCATCACCACCTCGCGACTCCTCCGATGGCGCAACACCGGCCACTTGCTCTTCCGGCCGCCGTTTCCGGCGGCGGACTCAGCAGAGAAGAAGAAGACATGTCGAATCCGAGCAGCAGCGGCGGAGGAGGCGGTGGAGGCGCCACCGGAACGAAGAAGAGGTTCAGAACAAAGTTCACACAGGAACAAAAAGACAAGATGCTAGCGTTTGCTGAAGAACTTGGATGGAGAATCCAGAAGCATAATGAAGCTGCTGTGGAACAATTCTGTGCTGAGAATTGTGTGAAGAGAAACGTTCTCAAGGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 798 0.5689 MEFDEQEEQEEEMGIPETPQPPPASYDSLGNSATRTKLAEGTASRKSAFGTVRYRECQKNHAVSFGGHAVDGCCEFMAAGEEGTLEAVICAACNCHRNFHRKEIDGETVSSCQRPPQQPPPPPQMYHHHHQFSPYYHRGPQHHPAAGAGYLHHHLATPPMAQHRPLALPAAVSGGGLSREEEDMSNPSSSGGGGGGGATGTKKRFRTKFTQEQKDKMLAFAEELGWRIQKHNEAAVEQFCAENCVKRNVLKVWMHNNKNTLGKKP. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01882 265 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 261 - -
Seca8g01882 265 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
Seca8g01882 265 NCBIfam homeobox domain, ZF-HD class 202 259 IPR006455 -
Seca8g01882 265 Gene3D - 187 262 - -
Seca8g01882 265 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Seca8g01882 265 MobiDBLite consensus disorder prediction 24 41 - -
Seca8g01882 265 FunFam Zinc-finger homeodomain protein 2 195 263 - -
Seca8g01882 265 SUPERFAMILY Homeodomain-like 188 263 IPR009057 -
Seca8g01882 265 MobiDBLite consensus disorder prediction 107 147 - -
Seca8g01882 265 MobiDBLite consensus disorder prediction 1 45 - -
Seca8g01882 265 MobiDBLite consensus disorder prediction 171 202 - -
Seca8g01882 265 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01882 Seca-Chr8 39134897 39135694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01882 1 261 ZF-HD Transcription Factor Family AT4G24660 50.382 5.88e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca8g01882 ZF-HD_dimer 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01882 - - gmx:100776421 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01882 8 39134897 39135694 Seca8g01882 8 39134897 39135694 ECH
Seca4g01572 4 25554174 25554971 Seca8g01882 8 39134897 39135694 PCT