Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01880 ATGGGCTATCTCTCCTGCAACGCCGAGTCTGCAATTGCCACGTGTGATCCCCACTACAAGAAAAAAACCACCAACCCCAAAACTCTCAAATACTATTCCCAACCCAAAGTCAGAGAGTTTTCCTACTCGGAACTCCTCGCCGCCACTAACGGCTTCTCCTCCGACACCTTCTTAGGCAAAGGCAGCCACGGCAGCGTCTACAAAGCCAACCTCGACGGCGGCAACCTCATCGCCGCCGTCAAGAGTACAAAACGCCACCACACTGCCGCAGACAACGAGATCGAGATCCTCTCTCGCATCGCAAACCCTCGCCGCTTCGTCAACCTCATTGGCTTCTCCATTGACCACGCCATCAACAACAACAACAAGCTAATAGTCGTGGAGTACATGCCTAACGGCTCGCTCTACGACCTCCTTCACTCGAAACCGGTCCGACCGCCCGGTTGGACTCAACGCGTCCAGTTCGCGCTACAAATCGCGAAGGCGGTTCACGCACTTCATTCTCTGGACCCGCCGGTGATCCACCGCGACATCAAATCCTCCAACGTTCTCATCGACGATCGCTGGAACGCGAGGCTTGGCGATTTCGGTCTTGCGCTCAGAGGACACGTGGAGGACGCTCGCGTGAAATGTACTCCGCCGGCGGGAACTCTAGGTTACCTTGACCCGTGCTATCTTGCGCCGGCGGACCTCACCGATAAGAGCGATGTTTATAGCTTCGGGATCTTGCTGCTCGAGATAATCAGTGGCCGGAACGCTATTGACGTGAGCTACAGTCCGCCGTCAGTGTTGGACTGGGCGGTGCCGTTGATAAAGCGCGGCGAGGTCGCCGGTATCTGTGACCCGAGGATCGGAGCGCCGCTCGATGAGGTGGCGGTACGGAAGTTAGCGGTGCTTGCGGCGAGGTGCGTGAGGTCGACGACGGAGAAGCGGCCGTCGATGGCGGAGGTTGTGGAGTGCGTGAAGGCGGTGAGGAAGAGGGTTCACGCGCCGGCGATATGGAACAGAATGAAGAGACGCGTGGAAGCGCGTGGGAGACCGTTGGTTATTGATTGTGACAGGAGTGAAGAATTTGTGAGGGTAGTTAAGGGTGGGAGCAGAAGGAACGGGAAAGTATCCAGTGTGTCGGGTGTAGAGAATGGGAGTGTTCCCGCGAATCGAACGGTTAGGTCTAGATCCATTGGTTCTGGTTTTTTTAGTGAGATCAAAATTAAATCAGGTTCGGATCCGAACCAGACTGGGTCCAGGTTTGGAAGTAGGAAAGGGAAAATGGTGGCAACGAGGCTCAAAAGATCAAGGTCTATGGGGTTTTTGCAAACTGCACGTCTTTTACATTATGGTAATGAGAATGTAATTGCGAATGCGAAGCCAAAGATGTGTTATCAGAAACACAACGATAATAATAATGACCCGATTCGTTCAACGGAGAAGGCATTGTCCAAGCTGGTCATTATGGATAAGAAGTTGGAACAGAAAATACAGGAAAAACCATTGGTTTATTTATTCACATCGTGTGGAGAATCAAAGTAA 1530 0.5288 MGYLSCNAESAIATCDPHYKKKTTNPKTLKYYSQPKVREFSYSELLAATNGFSSDTFLGKGSHGSVYKANLDGGNLIAAVKSTKRHHTAADNEIEILSRIANPRRFVNLIGFSIDHAINNNNKLIVVEYMPNGSLYDLLHSKPVRPPGWTQRVQFALQIAKAVHALHSLDPPVIHRDIKSSNVLIDDRWNARLGDFGLALRGHVEDARVKCTPPAGTLGYLDPCYLAPADLTDKSDVYSFGILLLEIISGRNAIDVSYSPPSVLDWAVPLIKRGEVAGICDPRIGAPLDEVAVRKLAVLAARCVRSTTEKRPSMAEVVECVKAVRKRVHAPAIWNRMKRRVEARGRPLVIDCDRSEEFVRVVKGGSRRNGKVSSVSGVENGSVPANRTVRSRSIGSGFFSEIKIKSGSDPNQTGSRFGSRKGKMVATRLKRSRSMGFLQTARLLHYGNENVIANAKPKMCYQKHNDNNNDPIRSTEKALSKLVIMDKKLEQKIQEKPLVYLFTSCGESK. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01880 509 Pfam Protein tyrosine and serine/threonine kinase 56 320 IPR001245 GO:0004672|GO:0006468
Seca8g01880 509 Gene3D Phosphorylase Kinase; domain 1 13 129 - -
Seca8g01880 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Seca8g01880 509 PANTHER OS01G0253100 PROTEIN 27 324 - -
Seca8g01880 509 FunFam Serine/threonine-protein kinase-like protein 130 334 - -
Seca8g01880 509 Gene3D Transferase(Phosphotransferase) domain 1 130 340 - -
Seca8g01880 509 SMART serkin_6 52 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01880 509 SUPERFAMILY Protein kinase-like (PK-like) 36 322 IPR011009 -
Seca8g01880 509 ProSiteProfiles Protein kinase domain profile. 52 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01880 509 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01880 Seca-Chr8 38935045 38936574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01880 36 318 Receptor kinase-like Gene Family AT3G59420 42.466 3.02e-64 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca8g01880 PK_Tyr_Ser-Thr 3.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01880 - - zju:107411142 537.724