Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01872 ATGGCACCCAGTTTTGATTGTGTTTCAAGCCTTCTCTGTGCTGAAGACAACAGCATTTTTGATGAAAACGATTTTGGGGGTTCGATGGAGATGTTGGAGGAAACATGGAATCCTAGATATAATCGAAACTATAATCAAAGTCAGCAACACTATGGTGACCCAAATGGGTGGTTGCAATTGCAGAGTGATGAGTGTTTGGCTCTAATGGTGGAGAAGGAATGTCACCACTTGCCTGGTGGTGATTATGTGAATAGGCTGAGAAGTGGGAATTTGGATTTTGGGGCTAGAAATGAGGCCATTGATTGGATTGAAAAGGTCAGAGAGCATTTTGGTTTTGGACCTCTCAGTGCATATCTATCCATAAACTACTTGGATCGATTCCTTTCTGCATATGAATTATCAATCCACTCTCAGAAGCAAAGACCTTGGACAATGCAATTGCTGGCTGTGGCATGCTTATCTCTTGCAGCCAAAGTAGATGAGACTGAAGTTCCTCTGTCTCTTGATTTGCAGGTGGGTGAATCTAAGTTTTTATTTGAAGCTAAAACAATACAAAAGATGGAGCTTCTTGTACTGAGCACATTGAAGTGGAGAATGCAAGCAATTACCCCATTTTCCTTCATTGACTATTTCCTTTTGAAGATCAATGATGATCAAAGTGCAATAGGGGCTTCAATTTTTCAATCTGTCCAACTTATACTGAGTACTGTAAGAGGAATTGACTTCTTGGAGTTCAGACCATCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGGAAACCCAAACAGTTCACACTGAGAAAGCAATTTCTGTTCTGATTCACCATGTAGAAAAGGAGAGAGTATTGAAGTGTGTTAAAATGATGAATGAGCTGTCATCAGGTAGTGGTTCTGCTAAGAATACTAGTGCTTCTGTTCCTCCTGTCCTTTGTGTGCCCCAAAGCCCAATAGGGGTGTTGGACACTGTGTGCTTAAGCTACAAAAGTGATGACACAAATGTTGGTTCATGTGCAAATTCTTCACTCAATAGTCCAGATGCTAAAAGGAGGAAGCTAAAATAA 1065 0.4113 MAPSFDCVSSLLCAEDNSIFDENDFGGSMEMLEETWNPRYNRNYNQSQQHYGDPNGWLQLQSDECLALMVEKECHHLPGGDYVNRLRSGNLDFGARNEAIDWIEKVREHFGFGPLSAYLSINYLDRFLSAYELSIHSQKQRPWTMQLLAVACLSLAAKVDETEVPLSLDLQVGESKFLFEAKTIQKMELLVLSTLKWRMQAITPFSFIDYFLLKINDDQSAIGASIFQSVQLILSTVRGIDFLEFRPSEIAAAVAISVVGETQTVHTEKAISVLIHHVEKERVLKCVKMMNELSSGSGSAKNTSASVPPVLCVPQSPIGVLDTVCLSYKSDDTNVGSCANSSLNSPDAKRRKLK. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01872 354 Gene3D - 68 288 - -
Seca8g01872 354 SMART Cyclin_C_2 202 319 IPR004367 -
Seca8g01872 354 FunFam D2/4-type cyclin 79 195 - -
Seca8g01872 354 Gene3D - 79 200 - -
Seca8g01872 354 CDD CYCLIN_AtCycD-like_rpt1 95 197 - -
Seca8g01872 354 Pfam Cyclin, N-terminal domain 66 199 IPR006671 -
Seca8g01872 354 SMART cyclin_7 101 193 IPR013763 -
Seca8g01872 354 SUPERFAMILY Cyclin-like 184 294 IPR036915 -
Seca8g01872 354 PANTHER CYCLINS 63 294 IPR039361 -
Seca8g01872 354 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Seca8g01872 354 FunFam D6-type cyclin 196 288 - -
Seca8g01872 354 Pfam Cyclin, C-terminal domain 202 302 IPR004367 -
Seca8g01872 354 SUPERFAMILY Cyclin-like 58 199 IPR036915 -
Seca8g01872 354 CDD CYCLIN_AtCycD-like_rpt2 202 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01872 Seca-Chr8 38667681 38670360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01872 69 339 Core Cell Cycle Gene Families AT2G22490 51.264 4.89e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01872 K18810 - gmx:100803873 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01872 8 38667681 38670360 Seca8g01872 8 38667681 38670360 ECH