Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01843 ATGTTCTCCAAGCTTCACCAACAACATCAACAACTCTTCCAACCCTCCCGGGAATGCCAAACTTCCGAAGATGATGACAGCCGAAGCAGCGGTGGGCCTAACCCTGCCACCGCTCAAAGGCCCACATCTGGTGGCAGCATAGGCGACGGGGCAACCATTGAGGTAGTGCGTCGGCCCAGAGGCCGCCCACCTGGGTCCAAAAACAAGCCCAAACCGCCACTTATCATAACCCGCGAGCCCGAGCCCGCCATGAGCTCACACATTCTTGAAGTCCCTGGAGGAAGCGATGTGGTTGAGTCCATAGCCCGGTTCAGCCACCGCAAGAACACGGGCCTGTGCGTCCTAACCGGTTCAGGAACCGTCGCTAACGTCACTCTCCGTCAACCCTCCGCCACTCCCGGCGCCACTGTCACCTTCCATGGCCGTTTCGACATCCTCTCAATATCCGCCACCTTCCTCCCTCATCCGCCGGGAACCTCGCCGCTGGTCCCTAACTGCTTCACCATCTCCCTCGCCGGACCTCAGGGCCAGATCATCGGAGGACTCGTCGTCGGCCGGTTGCTCGCTGCCGGAACCGTCTTCGTCATAGCCGCTTCATTCAACAATCCCTCATATCACAGGCTTCCCTCGGAGGAGGACGTGCGGAACAGCGCCGGCGGCGAGGTGCAATCCCCGCCAATATCCGGTGGCGGTTCAGAGAGTGGGCATGTCCCGGTAGAATCGTGTATGTACAGCTGTCACCTTCCTTCAGATGTGATTTGGGCTCCAACTGCAAGACCACCACCACCACCTTTCTGA 798 0.5952 MFSKLHQQHQQLFQPSRECQTSEDDDSRSSGGPNPATAQRPTSGGSIGDGATIEVVRRPRGRPPGSKNKPKPPLIITREPEPAMSSHILEVPGGSDVVESIARFSHRKNTGLCVLTGSGTVANVTLRQPSATPGATVTFHGRFDILSISATFLPHPPGTSPLVPNCFTISLAGPQGQIIGGLVVGRLLAAGTVFVIAASFNNPSYHRLPSEEDVRNSAGGEVQSPPISGGGSESGHVPVESCMYSCHLPSDVIWAPTARPPPPPF. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01843 265 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 202 IPR005175 -
Seca8g01843 265 MobiDBLite consensus disorder prediction 207 234 - -
Seca8g01843 265 MobiDBLite consensus disorder prediction 1 81 - -
Seca8g01843 265 PIRSF ESCAROLA 1 253 IPR014476 GO:0003680
Seca8g01843 265 ProSiteProfiles PPC domain profile profile. 81 221 IPR005175 -
Seca8g01843 265 FunFam AT-hook motif nuclear-localized protein 85 219 - -
Seca8g01843 265 MobiDBLite consensus disorder prediction 1 18 - -
Seca8g01843 265 CDD DUF296 87 200 IPR005175 -
Seca8g01843 265 Gene3D - 84 217 - -
Seca8g01843 265 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 212 - -
Seca8g01843 265 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 225 IPR014476 GO:0003680
Seca8g01843 265 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01843 Seca-Chr8 38161053 38161850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01843 49 263 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 68.860 1.62e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01843 - - gmx:100811053 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01843 8 38161053 38161850 Seca8g01843 8 38161053 38161850 ECH