Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01834 ATGCTTCCTTTTCGAAGATTCTACGGGTTCGAGAGCTGGCTTGATCATGAGTCAGGGCACGTTCAGAGCTCGTTGATCAAGGCAGTGGAATTGAACGGTGGGAGATCAAAAGGGGAGAGGAAATCAATGGAAGCATGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGGCAGCGAATCAACGCCCACCTCTCCACACTACGCTCTCTCCTCCCTAACGCCGCCAAGTCAGACAAGGCGTCGTTGCTGGCGGAAGTGGTTCAGCACGTGAAACGGTTGAGGAAGGAAGCTGATGACGTGGCGTGCCGTCGTCACGACGGAGACTCGTCGTCTTCCTGCAGTGGCGAGCCCGGTTCGGTTCTTTCTGCGGAGGATGCTGACACGTGGCCGTTTCCTGGGGAGTCTGATGAAGCCACGCTGAGCTATTGCGACGGCGAACCGAGGCGGGTGAAAGCGATGCTGTGCTGTGAGGACCGGCCCGGTTTGAACCAGGATCTGACACAGGCAATCCGGTCTGTTCGAGCCAAGGTGGTTCGAGCGGAGATGATGACGGTTGGGGGCAGGACCAAGAGTGTGGTGGTGATACAGTGGCCTGATGGTGGTGGTGGTGACGGAATAGAGGAGGAGGAGGAGATTGGAGGGTTGGAACGGGCTTTGAAGGCTGTGATTGAGAATAGAGCTTTTGTGGGCCCTGGTATGGGCCGGGTGATGTTGGGCCAGAAACGGGCTCGGGATGGCTATGGTTCGTCTAGTACTAGTAGTGAAATTGACTGCGCCTTCTTGAATTCTTGCTGA 795 0.5635 MLPFRRFYGFESWLDHESGHVQSSLIKAVELNGGRSKGERKSMEACKSHREAERRRRQRINAHLSTLRSLLPNAAKSDKASLLAEVVQHVKRLRKEADDVACRRHDGDSSSSCSGEPGSVLSAEDADTWPFPGESDEATLSYCDGEPRRVKAMLCCEDRPGLNQDLTQAIRSVRAKVVRAEMMTVGGRTKSVVVIQWPDGGGGDGIEEEEEIGGLERALKAVIENRAFVGPGMGRVMLGQKRARDGYGSSSTSSEIDCAFLNSC. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01834 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 100 IPR036638 GO:0046983
Seca8g01834 264 Gene3D - 152 227 - -
Seca8g01834 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Seca8g01834 264 Pfam Helix-loop-helix DNA-binding domain 46 93 IPR011598 GO:0046983
Seca8g01834 264 MobiDBLite consensus disorder prediction 99 123 - -
Seca8g01834 264 SUPERFAMILY ACT-like 153 222 IPR045865 -
Seca8g01834 264 Gene3D - 39 101 IPR036638 GO:0046983
Seca8g01834 264 PANTHER TRANSCRIPTION FACTOR BHLH30 35 244 IPR045847 GO:0003700|GO:0006355
Seca8g01834 264 MobiDBLite consensus disorder prediction 36 55 - -
Seca8g01834 264 SMART finulus 50 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01834 Seca-Chr8 38026549 38028297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01834 41 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 38.537 1.99e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g01834 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01834 - - gmx:100816394 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01834 8 38026549 38028297 Seca8g01834 8 38026549 38028297 ECH