Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01822 ATGGCGAGGCAGAAGATAAAGATCAAGAAAATTGACAACGTAACGGCGAGGCAAGTGACGTTTTCAAAGAGAAGGAGAGGGATCTTCAAGAAAGCTGAAGAGCTTTCTGTGCTGTGCGATGCTGAGGTTGGTCTTGTTATTTTCTCAGCTACTGGGAAGCTTTATGAATACGCTAGTTCCAGGTTGTTTCGAAATGGTAGCAATCTGATTCATAGAGTGTTAATTATTCTGTTGAATCATGGCAAGAATTGCCTTATGTTGAGCAGTATGAAGGGCATAATTACAAGGTATAAACAGCACTCTCAAAGCATCAACGAATTGGACAGACCTCTAGAACTGCAGCTAGAGAATAATAACAAGATAGCTGAATTGCATAAGGAAGTTGCTGATAAAACCCAACAACTAAGGAGGATAAAAGGTGAGGATTTTCAAGGGCTAAACTTGGATGATTTGCAGCAACTGGAGAAAACACTTGAAACGGGACTCAAGCGCGTGATTGAGATCAAGGAAAAGAAGATTATGGATGAGATTGTTGCACTTCAGAAGAAGGGAAACACGTTAGAAGAGGAGAACAACCATTTGAAGCAAAAGATGGCTGCTATGCTGTGTAAGGGAAGAAGTCCTTTCCTGGTGGATTCAGATATTACCATGCAGGAAGTTGTCTCATCAGATTCTATGAATAACGTCTGCAGCTGCAATAGTGGCCCTTCTCTTGAAGATGATTCCTCTGACACATCTCTCAAGTTAGGGGTTGCCCTTCCCTAA 765 0.417 MARQKIKIKKIDNVTARQVTFSKRRRGIFKKAEELSVLCDAEVGLVIFSATGKLYEYASSRLFRNGSNLIHRVLIILLNHGKNCLMLSSMKGIITRYKQHSQSINELDRPLELQLENNNKIAELHKEVADKTQQLRRIKGEDFQGLNLDDLQQLEKTLETGLKRVIEIKEKKIMDEIVALQKKGNTLEEENNHLKQKMAAMLCKGRSPFLVDSDITMQEVVSSDSMNNVCSCNSGPSLEDDSSDTSLKLGVALP. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01822 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca8g01822 254 Coils Coil 121 141 - -
Seca8g01822 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Seca8g01822 254 Coils Coil 151 197 - -
Seca8g01822 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca8g01822 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca8g01822 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca8g01822 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca8g01822 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca8g01822 254 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Seca8g01822 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca8g01822 254 SUPERFAMILY SRF-like 1 62 IPR036879 GO:0003677|GO:0046983
Seca8g01822 254 CDD MADS_MEF2_like 2 103 IPR033896 GO:0000977|GO:0045944
Seca8g01822 254 Pfam K-box region 118 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca8g01822 254 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01822 Seca-Chr8 37486364 37498207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01822 1 252 MADS-box Gene Family AT4G24540 49.412 1.60e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca8g01822 K-box 3.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01822 - - rcu:8268411 273.863