Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01819 ATGATGAAAAATATTTCTCCATGTCTCCCTCGTTTCCTAATGTTAAACACCAAAAACAGAAAGAATAGACGAATAAAGAGCACGAGCATCACTTGGCACATGACATGGGTGATGGGTGGTGCAGCTTCTTTCAAGCCATTCACCGTCACATTCCCCATCATCGTCACCGCGCTCATTCTAATTAGCCCCCGGAATATTATGGCCGCAAGACCCGACGACGAAGATTCAAAAGAAAACACAATTCCCTCTCTCGAAGACTACAGCACGTCACCGCCGGCTGCGTCACCCACCGGCAATTCCGGTCACAAAGAGAGGAAACCGAACGCATTAAAGCCAAACGCCGCAGTGGTGGTGGGCGTTTTGACCATCACGTTTTCCCTCACCTTTCTCCTCCTCCTCTATATCAAGCACTGCAAAAGCGGGAGCACGTTCATTACCGGCAACGCGAATCAACGTTCCGACGAGAAAAAGAACTCCGGCGTTGACCGCGCGGTGGTGGAAGCGTTGCCGATTTTCCGATTCGGTTCGTTGAGGGGACAGAAAAACGGTCTAGAATGCGCGGTTTGTCTCACCGGTTTTGAGGACCCCGAAGTTCTGAGGCTGTTACCGAAATGCAAGCACGCGTTCCACGTGGAATGTGTTGACACGTGGCTCGACGCGCATTCAACGTGCCCTCTTTGTCGCGACAAGGTCGACCCTGAAGACTTTGTTCTGGTAGTGGAGCCGCGCCAAAACGCGAAGGAAGAAGAATCGCCGGAAAGTGGAAACAATAATAATAACGACAACGACGCACCGCAATCGGAAAATCTAGGGTCCCGGCGAGTCTCCGAGAGGCACTCGTCGGTGGGAGAGAGGGATGAGGAGTTTTTACAGATTGTTCTGCAGGAGAAGCAGGAACAGAATACGGAAACGTCGTCGTTTAGGAGGTCTTTGGATAATGCCTCTGGGGAAATAAAGAGCGTGGGGAAGAAGATGGAAACGTCGTCGTCTAGGAGGCATTTGGATAGTGCCACGGGGGAAATAAAAAGCGAGGGGCAGAGGATGGAAACGTCGTCGTTGAGGCGTGACGGTGAGAGGACGAATGCGGAGCGGCACAGGTTAGAGCACCGTATAATTATCTCCCATTCTTTCTCACGAGGTGGGGTCCACGAGCGGTGGAGCGATGTTCAGCCGTCTGATTTGTTGTATTTAACCTCCGAGAAGATCATCAGCGATGCTTCCTCTTACTCGCGCAGAGGAAGAAGAACGGTGCGGGAGCAGAGACACAACGTTGATGATGAAATAGAGAACGGTTTTGGTGTTTGTGGTGGTGGGAGTGGAGTGATGAAGAATTTGAGGAGTGTTTCGGAGATGACGGGAATGAGCAGGTTTTTAAGGGGTAACAAGAGGGAGAGAGGTGGGAGGGAAGAACAAGAGCAGCAACGTGAGGGATCTGTTTCGAGGTGGTTGGGTTCGGTTTCCAGGTCACAAACACGACGAGGAGATGTGTCTTAG 1494 0.5141 MMKNISPCLPRFLMLNTKNRKNRRIKSTSITWHMTWVMGGAASFKPFTVTFPIIVTALILISPRNIMAARPDDEDSKENTIPSLEDYSTSPPAASPTGNSGHKERKPNALKPNAAVVVGVLTITFSLTFLLLLYIKHCKSGSTFITGNANQRSDEKKNSGVDRAVVEALPIFRFGSLRGQKNGLECAVCLTGFEDPEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRDKVDPEDFVLVVEPRQNAKEEESPESGNNNNNDNDAPQSENLGSRRVSERHSSVGERDEEFLQIVLQEKQEQNTETSSFRRSLDNASGEIKSVGKKMETSSSRRHLDSATGEIKSEGQRMETSSLRRDGERTNAERHRLEHRIIISHSFSRGGVHERWSDVQPSDLLYLTSEKIISDASSYSRRGRRTVREQRHNVDDEIENGFGVCGGGSGVMKNLRSVSEMTGMSRFLRGNKRERGGREEQEQQREGSVSRWLGSVSRSQTRRGDVS. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01819 497 SUPERFAMILY RING/U-box 181 233 - -
Seca8g01819 497 MobiDBLite consensus disorder prediction 458 476 - -
Seca8g01819 497 MobiDBLite consensus disorder prediction 243 361 - -
Seca8g01819 497 MobiDBLite consensus disorder prediction 477 497 - -
Seca8g01819 497 CDD RING-H2_EL5-like 185 228 - -
Seca8g01819 497 MobiDBLite consensus disorder prediction 294 313 - -
Seca8g01819 497 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Seca8g01819 497 MobiDBLite consensus disorder prediction 251 271 - -
Seca8g01819 497 MobiDBLite consensus disorder prediction 272 293 - -
Seca8g01819 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 235 IPR013083 -
Seca8g01819 497 MobiDBLite consensus disorder prediction 458 497 - -
Seca8g01819 497 Pfam Ring finger domain 185 228 IPR001841 -
Seca8g01819 497 SMART ring_2 186 227 IPR001841 -
Seca8g01819 497 MobiDBLite consensus disorder prediction 70 107 - -
Seca8g01819 497 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 95 488 - -
Seca8g01819 497 MobiDBLite consensus disorder prediction 82 97 - -
Seca8g01819 497 MobiDBLite consensus disorder prediction 324 361 - -
Seca8g01819 497 FunFam RING-H2 finger protein ATL43 161 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01819 Seca-Chr8 37344951 37346930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01819 108 489 C3H Transcription Factor Family AT5G05810 42.611 4.37e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01819 K19041 - mtr:11437137 315.849