Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01805 ATGGAGCCTGCAATGTACGGACACTCCCAGCCCATGAACATGCCCGGACAGATCGGCTCCGGTGAAAGTGACGACGGCTCCGGCGCTGAGGCCGCCATCGACGGCCACCACCACCACCACATTCAATACGAAACGCACACTCTCGAAGATGGTAGCGGTGGAGTTGGCGGTGGCGGTGTCGTCGAGGATGTTACTTCAGATGCTCTATACGCTTCTGGCCATGGTGGTGGAGGCTCTGAATTGTCTATTCAACACTGCGACGACTCTAGCCAGCTTACGCTGTCGTTTCGTGGCCAACTTTATGTTTTCGATTCAGTTACGCCCGATAAGGTTCAAGCGGTGTTGCTACTGTTGGGTGGATGTGAACTACCTCAAGCGGGTACGCCATGTGTGGATACGGGGCCTCAACAAGATCACAGGGGTTCCTTGGATTATCCTGCAAGATGTAGTCAACCACAGCGAGCAGCCTCATTAAGTAGGTTCCGACAAAAGAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGTGTGCGTCAAGAAGTTGCACTCAGGATGCACCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAACAGCTGTGGTACGGACCAAGAGTCAGGGCAGGATGACAGTCAGTCGGAAACCTCATGCACACATTGTGGCATAAGTTCAAAATCGACCCCAATGATGCGGCGAGGGCCATCTGGTCCGAGGTCACTGTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCATGAACACTCTCTTGCACCAGCCGAGCGGGTTGAAGGTAATAATGATTCAGACTGTCAGACTGCCATTCCTGCACCTAACAATCTTGCTGCTTTCGCAGAAAATGATAACTCAGCTCTGGTAGCTGATCGTTGA 933 0.5048 MEPAMYGHSQPMNMPGQIGSGESDDGSGAEAAIDGHHHHHIQYETHTLEDGSGGVGGGGVVEDVTSDALYASGHGGGGSELSIQHCDDSSQLTLSFRGQLYVFDSVTPDKVQAVLLLLGGCELPQAGTPCVDTGPQQDHRGSLDYPARCSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSCGTDQESGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEHSLAPAERVEGNNDSDCQTAIPAPNNLAAFAENDNSALVADR. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01805 310 ProSiteProfiles CCT domain profile. 154 196 IPR010402 GO:0005515
Seca8g01805 310 SMART GATA_3 216 269 IPR000679 GO:0006355|GO:0043565
Seca8g01805 310 Gene3D - 212 272 IPR013088 GO:0006355|GO:0008270
Seca8g01805 310 MobiDBLite consensus disorder prediction 1 32 - -
Seca8g01805 310 Pfam GATA zinc finger 222 257 IPR000679 GO:0006355|GO:0043565
Seca8g01805 310 Pfam tify domain 89 119 IPR010399 -
Seca8g01805 310 ProSiteProfiles Tify domain profile. 85 120 IPR010399 -
Seca8g01805 310 ProSiteProfiles GATA-type zinc finger domain profile. 216 276 IPR000679 GO:0006355|GO:0043565
Seca8g01805 310 CDD ZnF_GATA 221 266 IPR000679 GO:0006355|GO:0043565
Seca8g01805 310 MobiDBLite consensus disorder prediction 195 235 - -
Seca8g01805 310 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355|GO:0043565
Seca8g01805 310 PANTHER GATA TRANSCRIPTION FACTOR 28 28 277 IPR045280 GO:0006355
Seca8g01805 310 SMART tify_2 85 120 IPR010399 -
Seca8g01805 310 MobiDBLite consensus disorder prediction 187 240 - -
Seca8g01805 310 Pfam CCT motif 154 196 IPR010402 GO:0005515
Seca8g01805 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01805 Seca-Chr8 36223587 36229393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01805 59 309 Tify Gene Family AT4G24470 53.184 5.17e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca8g01805 CCT 4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01805 - - pvu:PHAVU_008G182900g 466.463