Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01793 ATGTCCTCACAAGCAGTGCAGTTGCGCATCTCAGACAGTCATGTGGTTATGGACAATGGCATACTGCAAGTGTATTTATCCAATCCAGGTGGATTTGTCACTAGAATACAATATAATGGCATTGATAATTTGCTTGAAGCTCTTAATGAAAAGAATAATAGAGGGTACTGGGATGTTGTTTGGAGTGAAGCAGGAAGTACAGGAACAACCGGGACATTTGAGCGGATTTTGGGAACAAGTTTTAAAGTTATAATACAAAATGAGGAACAGGTTGAAATCTCATTTACAAGAATGTGGGATCCATCTCTAAAGGGAAAACAATCACCTCTAAATATTGACAAGAGGTATGTGATGCTTCGAAATTCCTCAGGCTTCTACTCTTATGCCATCTTTGAACACCTAAAGGAATGGCCTCCTTTTAACATACCTCAAACCAGGATTGTTTATAAGCTTCGGAAAGACAAGTTTCATTACATGGCTGTGGCAGATGATAGACAAAGATTCATGCCTCTCCCTGACGATAGATTACCAGGAAGAGGAGTAGAACTAGTTCCCCCAGAAGCAGTTTTGCTCGTCCATCCCGTGGAGCCAGAGTTCACGGGAGAGGTGGATGACAAGTATCAATATTCATGTAACAACGAAGATCTTGAGGTTCATGGATGGATAAGTTCAGAATCCAAAACTGATCCACCTATGGGATTCTGGGTAATCATACCCAGCAATGAGTTCAGATCAGGTGGCCTTGTTAAACAGAACCTTACTTCTCATGTAGGCCCCATCAGCCTCGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTCCTTAAACTCCAGCCAAATGAGCCATGGAAGAAAGTTTTTGGACCAACTTTTGTATATCTTAACACTTTGTTGGATGGTGAAGACCCACTAGAGCTATGGGAGGATGCCAAAAATCAGATGAACAAGGAAGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAAAGTCTAACCAACGGGGCAGTGTGTGTGGCACGTTACTAGTTCAAGACAGGTGCCTAAGTGATGAGTACATATTAGCAGAAGGTGCATACATAGGTCTGGCACCACCTGGAGACTCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAGAGCAAATGAGGAAGGCTATTTCTCAATCAATAATATACGTAGTGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAACAATGTTGTCATCACCATAACCCCAGGTTGTGAAATAAACGTTGGTGACATTATTTATGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATAGGAATACCTGATCGCTCTGCTGCTGAGTTCTATGTTCCTGATCCTAATCCAAAGTACATAAACAAACTTTATGTTGACCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGATTTATACCCAAATGAAGATTTGATTTATACAGTTGGTGTCAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTCACAAGGAAGAAAAACGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTTGATGAGGTGGAGGCAAGTGGAATCTATAAATTGCGTTTGGCGCTTGCAAGTGCAAATGTCTCTGAGTTACAGGTTTGGAACTGTCATGAACCAATACCCAAAAGTTTCAGCTTCTGGGTCAAGACACATAAAATAAATGGTTTTATTCTAACACATCGCTCCACACAAGAGTCTATTGAACTTAAAGCGTGGATAATGTACACTCTCACCTATCTTATATTGAAATTAAACTTTATTATCTTATATTGA 1863 0.4085 MSSQAVQLRISDSHVVMDNGILQVYLSNPGGFVTRIQYNGIDNLLEALNEKNNRGYWDVVWSEAGSTGTTGTFERILGTSFKVIIQNEEQVEISFTRMWDPSLKGKQSPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPPFNIPQTRIVYKLRKDKFHYMAVADDRQRFMPLPDDRLPGRGVELVPPEAVLLVHPVEPEFTGEVDDKYQYSCNNEDLEVHGWISSESKTDPPMGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGEDPLELWEDAKNQMNKEVQSWPYDFPASEDFQKSNQRGSVCGTLLVQDRCLSDEYILAEGAYIGLAPPGDSGSWQRECKGYQFWTRANEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNVVITITPGCEINVGDIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVDHPDKFRQYGLWERYADLYPNEDLIYTVGVSDYRKDWFFAQVTRKKNDGSYQGTTWQIKFNLDEVEASGIYKLRLALASANVSELQVWNCHEPIPKSFSFWVKTHKINGFILTHRSTQESIELKAWIMYTLTYLILKLNFIILY. 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01793 620 CDD RGL4_M 338 437 IPR029413 -
Seca8g01793 620 SUPERFAMILY Galactose-binding domain-like 444 564 IPR008979 -
Seca8g01793 620 Gene3D - 5 278 IPR014718 GO:0030246
Seca8g01793 620 SUPERFAMILY Starch-binding domain-like 381 435 IPR013784 GO:0030246
Seca8g01793 620 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 564 - -
Seca8g01793 620 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Seca8g01793 620 Gene3D - 335 434 - -
Seca8g01793 620 Gene3D - 445 573 - -
Seca8g01793 620 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Seca8g01793 620 FunFam Rhamnogalacturonate lyase B 335 434 - -
Seca8g01793 620 Pfam Polysaccharide lyase family 4, domain III 447 564 IPR029411 -
Seca8g01793 620 CDD RGL4_N 8 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01793 Seca-Chr8 35878109 35884565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01793 1 563 Polysaccharide Lyase AT1G09890 65.780 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01793 K18195 - gmx:100815677 1043.88