Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01788 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCAGGCAAGTGACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAACTCGCAATCTTGTGCGATGCTGAGGTAGGAGTTATGATCTTCTCAAGCACTGGCAAACTCTATGATTTCTCCAGTACCAGCATGAAATCAGTAATTGATCGATACAACAAATTAAAAGAAGAACATAATCAACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGCTAAGGCAACAACTGCACAGTTTGCAAGAAAGTCACCGGAAAATAATGGGGGAAGAACTATCAGGTTTGACAGTCAAAGAATTACAGAGTTTGGAGAACCAACTAGAAATTAGCCTTCGTGGTGTCCGTATGAAAAAGGACCAACTTTTAATTGATGAAATACAAGAACTAAATCGAAAGGGAAGCCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTAAACACAATTTGTCAAGAAAATATGGAATTGAAAACGAAGGTCTATGGAACAAAAGATGATAATGGACCAAACAGATATTCTGTTCTCACAAGTGGTCAAGGCATGGGAGAGGATTTGCAAGTGCCAGTTAACCTCCAACTAAGCCAGCCACAACAACACTACAAGGCACCTTCTGGAACTACTAAACTGGGCAGATTTCAATTGCATTGA 720 0.4111 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVIDRYNKLKEEHNQLGSSTSEIKFWQREAAMLRQQLHSLQESHRKIMGEELSGLTVKELQSLENQLEISLRGVRMKKDQLLIDEIQELNRKGSLIHQENVELYKKVNTICQENMELKTKVYGTKDDNGPNRYSVLTSGQGMGEDLQVPVNLQLSQPQQHYKAPSGTTKLGRFQLH. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01788 239 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Seca8g01788 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca8g01788 239 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Seca8g01788 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 201 - -
Seca8g01788 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca8g01788 239 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Seca8g01788 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca8g01788 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca8g01788 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca8g01788 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca8g01788 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca8g01788 239 Coils Coil 86 106 - -
Seca8g01788 239 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca8g01788 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca8g01788 239 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01788 Seca-Chr8 35773736 35787915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01788 1 230 MADS-box Gene Family AT2G22630 59.307 9.30e-94 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca8g01788 K-box 7.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01788 K09264 - gmx:100812413 416.001