Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01780 ATGATTGCTGAGAGATTGCTCCATCATGTACCATTTTACACTACAAAGACCATTTTGCATGACGAAACAATCTCTCAGGGACCATTTTGGGATTTTAAATCTCTTAGTGTCCAACATCAAGCAAGCGAGCGATCGTATCGCTGTCCAGAACCCAACATCTTCGGCACCAAGTTGTGCGATTGCATCCACATTGTGCAACCACCTCGCACTCCATTGTCACCGGCAGCCAGCTGCGCGACCGTATCTTGCGCGCCCCACACTGTCATTTGGACAGATTTGGAAAACATCGAGGAAGAGGAAATGTCTATGTTCGAAGAAAATGAGACATCCCCGATATGTTTTGCTTATGCGGAATATAACATCAATGTCATAAGTAGTCGAGGTCTATGTGATGATGCTAATGGTTCTGACGAAGGTGAAGAATTCTTAACTGAAGAAAGTTTGCAAGATGATTGTTTTGAAGATTTCATTATGATAGATGATTTTAATGATATTAAGAAGATTGATGTGAAAATTATCAGTGAAGATGGTGTTTGTAAATATGAATTTGCCGATCTAGATGTGGCCCATGAATTCTACAGTTGGTATGGACATAGAAGGGCTAGGAGCTCCACAAGAAGTTCTAAAAAGAGACAACTGAAACCTCTAACAAGGTTTGATTGTAAAGCAATATTCCGTGTTCACATCAACATTAACTCGGGCCGATGGTATGTGACAATATTTGATGATAGACACAATCACAAAATGTTGGAAGAACAATATTGTGGCATGTTACCAGCATATAGAAAGAGGACAGGATCTGACATTATGCAAATTAACAATTTTAGAGAAGTTGGCATAAGACCCCCTCATATCTATGGTTCACTTGCTAGACACATATTAGACGAGGATGGGAGACTTCGGCACCTATTCTGGTGTGATGGGGAAAGCCAAATGAATTGCCAAGTTTTTGGTGATGTGTTAGCCTTTGATGCTACTTATCGCAAGAACAAATACATGTGTCCTGTAGTGATCTTCTCTGGCGTCAATAACCATTATCAGGCCATTGTATTTGCAAGTGTTATTGTATTTGATGAGACAAAACAAACATATGTTTGGTTGCTGGAATAA 1110 0.3991 MIAERLLHHVPFYTTKTILHDETISQGPFWDFKSLSVQHQASERSYRCPEPNIFGTKLCDCIHIVQPPRTPLSPAASCATVSCAPHTVIWTDLENIEEEEMSMFEENETSPICFAYAEYNINVISSRGLCDDANGSDEGEEFLTEESLQDDCFEDFIMIDDFNDIKKIDVKIISEDGVCKYEFADLDVAHEFYSWYGHRRARSSTRSSKKRQLKPLTRFDCKAIFRVHININSGRWYVTIFDDRHNHKMLEEQYCGMLPAYRKRTGSDIMQINNFREVGIRPPHIYGSLARHILDEDGRLRHLFWCDGESQMNCQVFGDVLAFDATYRKNKYMCPVVIFSGVNNHYQAIVFASVIVFDETKQTYVWLLE. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01780 369 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 180 368 IPR031052 GO:0006355
Seca8g01780 369 Pfam FAR1 DNA-binding domain 196 250 IPR004330 -
Seca8g01780 369 Pfam MULE transposase domain 320 369 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01780 Seca-Chr8 35727460 35730475 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g01780 FAR1 1.2e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01780 - - gmx:102662272 213.001