Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01770 ATGGAGTTATATGATCATGATTTCTTGGAGGAATTGCTTGCTCTAAGAACAAAACCACATTTAGAAGAAAACCAACTCTTGAGTACTAATTATGGTTGGAGTTTTGATTGTTTTGATCAAAACTCTTCTCCTTTTCTTCCAAATGCTTCTTCTTCTTACCAAGAAGTTCCTCAAAATTACACTTTCAATGAAATCTACAGTTCATTACTTGATGAATTCTCTACACCCAAGATCATTGATTCATCATCCTATAACACCACCACTACCCTTGATACTCCACTTAACACACCTCCATTTCTGGCTCAAGAAGATTATCCATTGTCTGTGATGGAAGATGAGGATCCTGGTCTACTTGGGGATGAGCTTCATAGTTTGGACCTTCAAACCACATGCAAAATGGAGCCAAGCTTATCCCCTGAAGAAATGCCTGTTTTCAGCCAAGGTACATGTATGGAAAGAAAGAATAGAGCAAAGAAGCTTCAGGGTCAGCCTTCAAAGAATCTAATGGCAGAGAGGAGAAGAAGAAAGAGATTAAATGATAGGCTCTCTATGCTAAGATCAATTGTCCCTAAGATAAGCAAGATGGACAGAACATCTATTCTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATTAATAATTTGAAACAAGAAATAGAAGTAGATTCAAGCATGGCTAGCATTTTCAAGGATGTGAAGCCCAATGAAATCTTAGTGAGAAATTCTCCCAAGGTGCAATATATCCTGCAGTTTGATGTGGATAGGAAGAATGTGAACACAAGGGTTGAGATCTGCTGTGCAGGGAAGTCAGGGTTGTTGCTATCTACAGTGAACACCTTGGAAGCATTAGGCCTTGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGCTTCTTGTTCAGAGGAATTGGAACAGAAGACAATTCTGAGTTCTGAAGATATAAAGCAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 1014 0.3836 MELYDHDFLEELLALRTKPHLEENQLLSTNYGWSFDCFDQNSSPFLPNASSSYQEVPQNYTFNEIYSSLLDEFSTPKIIDSSSYNTTTTLDTPLNTPPFLAQEDYPLSVMEDEDPGLLGDELHSLDLQTTCKMEPSLSPEEMPVFSQGTCMERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEIEVDSSMASIFKDVKPNEILVRNSPKVQYILQFDVDRKNVNTRVEICCAGKSGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEQKTILSSEDIKQALFRSAGYGGRCL. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01770 337 Coils Coil 201 228 - -
Seca8g01770 337 Gene3D - 170 244 IPR036638 GO:0046983
Seca8g01770 337 SMART finulus 168 217 IPR011598 GO:0046983
Seca8g01770 337 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Seca8g01770 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Seca8g01770 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 68 332 - -
Seca8g01770 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01770 Seca-Chr8 35411965 35414154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01770 92 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 53.488 5.95e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g01770 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01770 - - gmx:100814388 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01770 8 35411965 35414154 Seca8g01770 8 35411965 35414154 ECH