Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01765 ATGTCTCGGCCTCTGCTCGGGATAGGGGATGAGGAAGGAGAAAGCAATGTCACTTTGTTGGTTTCTTCCTCAGCCACTGTGGAAAGTGTGTGCTTGAATGGTTCAAAACTGAAAGAGCGCAATTACATGGGGTTATCATCAGATTGTTCATCAGTGGACAGTTCAGTTCCACTTCCATCCTTCTCAGATGAGAGCAAAAGCAATCTGAACCTCAAAGCCACAGAACTCAGATTGGGGCTTCCAGGATCACAGTCTCCTGTAAGAGATTCAGATCTTTGCTTGAGAAGTTCAACTCAGTTTGATGAGAAGCCTTTGTTTCCTTTGCATCCAGTAACAGATGATCATCATTCCTCATCAAAGCCTGCTGTTTTGGGCAACAAAAGAGGGTTCTCAGATGCCATGAATGGATTCTCAGAGGATCTACTTTTTTGGAACCTGGAAACTAAATATAAAAAGCCCCCTCAATTTCTCATGCAGGGGAAATTGATGCTTGAGAATGTTGGGGCTCAACAAGCCAAAGCCAAAGAAATAGCAGCAACAGCCAAGGTTGGTCTTGAGGGTCCACATGATGCCAATGAAAGCAGACCAAGTCTTAATGGTTCTGCAAATAATAGTAATAATACTGCACCAGCTACAAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGACTACTGCTTCAAAGAATGTTGAAGAAGTGGATGGAAAAATGGGGTCTGGTGCACTGTTTGTGAAGGTCAGTATGGATGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACTCTGCATATGCAGAATTATCTTCTGCTCTGGAGAAGATGTTCAGCTGTTTCACCATAGGTCAATGTGGATCTCATGGAAATCTGGGCAAGGAGATGCTGAATGAAACCAAGCTGAAGGATCTGCTTCATGGGTCAGAATATGTTCTTACATATGAGGATAAAGATGGTGACTGGATGCTAGTGGGTGATGTTCCCTGGGAGATGTTTATTGATACATGCAGAAGGCTAAGGATCATGAAGAGCTCCGATGCCATTGGTCTAGCACCCAGAGCTGTTGAAAAAAATAAAAGCAGGAACTAG 1107 0.43 MSRPLLGIGDEEGESNVTLLVSSSATVESVCLNGSKLKERNYMGLSSDCSSVDSSVPLPSFSDESKSNLNLKATELRLGLPGSQSPVRDSDLCLRSSTQFDEKPLFPLHPVTDDHHSSSKPAVLGNKRGFSDAMNGFSEDLLFWNLETKYKKPPQFLMQGKLMLENVGAQQAKAKEIAATAKVGLEGPHDANESRPSLNGSANNSNNTAPATKAQVVGWPPIRSFRKNSLTTASKNVEEVDGKMGSGALFVKVSMDGAPYLRKVDLKNYSAYAELSSALEKMFSCFTIGQCGSHGNLGKEMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKNKSRN. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01765 368 MobiDBLite consensus disorder prediction 194 213 - -
Seca8g01765 368 ProSiteProfiles PB1 domain profile. 248 350 IPR000270 GO:0005515
Seca8g01765 368 FunFam Auxin-responsive protein 243 360 - -
Seca8g01765 368 SUPERFAMILY CAD & PB1 domains 244 349 - -
Seca8g01765 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 355 IPR003311 GO:0005634|GO:0006355
Seca8g01765 368 Pfam AUX/IAA family 74 359 IPR033389 -
Seca8g01765 368 MobiDBLite consensus disorder prediction 186 213 - -
Seca8g01765 368 Gene3D - 243 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01765 Seca-Chr8 35219937 35229314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01765 262 350 B3 DNA Binding Superfamily AT1G19220 32.584 4.31e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g01765 AUX_IAA 1.9e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01765 K14484 - gmx:100815447 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01765 8 35219937 35229314 Seca8g01765 8 35219937 35229314 ECH