Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01742 ATGGATATCCTCTGCCCTGAAAGTTTGAGCAAGAGAATAGTTGTGGCCAAGAAGCTAGCTCAGGGTCAAGAAGCTGCTACCCAGCTCAAGTTTCTGCTTCAGAATCCCTTTGAAGCTCATGGCTCTCTCTCATCAGAGGAACTTGTGACCAATGTGTTGAGATCTTTCACAGAGGCTCTTTCTATTGTAACCTCTTCCTCCTCTCAACCCTCTGCTGATGGTGCAGATGCAGATCAGAATAATCTGCTTAATTCCGGCGAAAATGGGTCGCCGGTGGTGGCCGGAGATTCCAATGAGAGTGGGAAGAAATATTCCTCTTTGGCCAAAAAGGGTAGGAGAGGTTGCTACAAAAGAAGGAAGAGTGCACAGACAAGGACCACAGTTTCCTACACTCACAGTGATAATCATGCATGGAGGAAGTATGGACAGAAGGAAATCCTGAATTCTGAATTCCCTAGGAGTTACTTCAGGTGCACTCACAAGTATGATCAAGGTTGCTCAGCAACAAAACAGGTGCAAAGGACACAAGAGAATCCAGATATGTACCAAACTACATACATTGGCATTCACACATGCAAACCCACCCCAAAGGCTACACAATTGATCAAAGATTATTCTACTACTTGGGATTCATTTCTGCTAAATTCTGATCCTGCTGATTCTAGTAGTGTTCCAAATGAACAGGAACATCATCATCACCATGTTATTAGCTCACCAAGCCTAACAATAAAACAAGAATATCCCAAAGAGGACACTCCTGCAGCAACTATGCCTTTAAACATGGAATCTGATAATGCAGATACTGTGTATTTTGGGGTGGAGTCTGTTCATTTTGGCAGTGACTTCCACTTTGATGAAAGTCAGTTGCTTCAATGCTTTGATAAGTGTCCTATGCTTAATTAA 903 0.4297 MDILCPESLSKRIVVAKKLAQGQEAATQLKFLLQNPFEAHGSLSSEELVTNVLRSFTEALSIVTSSSSQPSADGADADQNNLLNSGENGSPVVAGDSNESGKKYSSLAKKGRRGCYKRRKSAQTRTTVSYTHSDNHAWRKYGQKEILNSEFPRSYFRCTHKYDQGCSATKQVQRTQENPDMYQTTYIGIHTCKPTPKATQLIKDYSTTWDSFLLNSDPADSSSVPNEQEHHHHHVISSPSLTIKQEYPKEDTPAATMPLNMESDNADTVYFGVESVHFGSDFHFDESQLLQCFDKCPMLN. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01742 300 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 224 IPR044810 GO:0003700
Seca8g01742 300 Gene3D WRKY domain 116 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g01742 300 ProSiteProfiles WRKY domain profile. 127 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01742 300 MobiDBLite consensus disorder prediction 66 104 - -
Seca8g01742 300 SUPERFAMILY WRKY DNA-binding domain 129 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g01742 300 Pfam WRKY DNA -binding domain 134 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01742 300 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01742 300 MobiDBLite consensus disorder prediction 219 245 - -
Seca8g01742 300 MobiDBLite consensus disorder prediction 66 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01742 Seca-Chr8 34685878 34688750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01742 10 299 WRKY Transcription Factor Family AT3G56400 36.246 7.92e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g01742 WRKY 9.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01742 - - gmx:100796071 290.041