Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01726 ATGGGTAGACGTAAAAGTAAACCACATCGATCAGGTGGGATAATACTAGAAACAAATGCTACTGCTGAAACAGAATTGGGTAAACAGAATGTTGTAGAAGCAGGAAAAGAAGCAAAGGATAGTTGTGGTGACATTGATAAACCTTATTTTGTGGAGGTTGACCGGTCAGGTTGGTTGTCAAGTGAACACCTTGATATTTCTGAAGTTGTTTTAAGTGATTTGAATTTGAGAGAAGATTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAAGATCCCCAATACGTGTTAAGATTTCGGGTGTGTAATGTTAGCAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCAGCTAGAGTTTGTAAAAAGAGCTATGGTTGACAATGTGGAATCGTGTACAGTATTGCTATCTGGTACTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCACTTGGCAAATTTGAAATTTGTTACATTGAGGGCTGTTCTTGGGATTAGGCTTTCTGAGGAAATTACTTCCCTCAGGGTAAGGATTGAGGTACTAAAGAGTGCTTTCGATGCATGCGAGTCACTTCTTGAGGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGCTACGACCAGAAATAATGACTTCAGAAGTTAGGTATGGACTTGGTAGCTGTATGAAAATGGAGGTTGATCCACAGGCTGAGAAGGGAGACGACAGTTGTCATACCAGGAAACATGCGAGGTTTGATCCTGCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAACCAATGCTTCCAGATGACATACCTGAGTTACTTCCTGAAATGAGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAAGGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCTGTTTCATTCTCCATTATGTGTGCCTGTTGATTTTCTGGACACAAGTTCCAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCCTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTATGCTCACCGGAGATCAGCATCTGAAAGTGACATAATAATTGATTCAGTGCCACCAGTTAACGAGGATAAAAAAGTCACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTCAGTGAAAGTCTTAAATATCAAGGACTATGGGTTCAGTGTGACATATGTGATGCTTGGCAACATGCAGGCTGTGTTGGTTATTCACCTAAAGGAAAATCACTAAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATAGCTGAGAGAGATGGGCAATATGTGTGTCAGATGTGCTCTGAACTAATACAAGTTACTGAATCTCCCATTGCCTCCGGTTCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGTCATACGCGTCCAGGCTCCTTGAAAATTTGTGTTTATGAAGGCGTGCGAGACTCGTCTTTGTCCAATACATCTCCAATGGATATTAGTGATCTTGCCAGTGCTGACATTGTAATAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATGAAGGTGATCGTCACTTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACTAGAATATACTGGTGGAGGGTTTGTTTGGACGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCAAAGCATCGTTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACTTGTATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTTGATATATACAGGTGGTGGACTGAAGTTATTCAAGACCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTAGCAGATGAATTGGACCTTCCATCCCAAGAGGAGTGCCTCTCTTGGCTTACACTCTCACCAGTAGAAGAACACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAGAGTTTGAGAAATGATATTCTTAGTAGAAGAGTCCCAGGTTCTATATCTTTGAGTGGTTCCTCTGATCCTTTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTACTCAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCCTACAGCAGTCACCTATGACTATGGAGGAAATACTAATGGTTCTTATAGGCAAGACTAAGGTAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTATAATACAAAAAGAATTTTCTCAAGCTGCATTGCTGTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTATTAAATATTCACATTCATCATAATCTTGCTGAAATACTCCCTCTGGCTGCAAACTTTTCTTTGATATTGCCATCCAAAGGGAAACAATTCTCCGAAACCTCTGCAGTTAAAATGACCAGAAAGCATTTTATTGTAAAGGATGATCATGGTCTTGTTAAGAGGTGTAAAATAAGTGGCAATGATGACATAAATTTAACAGTGGCTTCTGCAGAACCATCACAAGTTGCATCTAGCCTTTCTGAAAATAACTTAAATGAGGATTTGGAATTTGATAGTTTATCTTCCAGTTCTGTCCAATCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTAACTGCAGCTCAACAGGAGTTTCAAAATTCTTACATGCAGGTTTGTAATGCATATCGTAACAGCAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTTCATCACGCTGAGCAGAACAAGGATTTCTCAACTGAATTGATTAAAAAGATTGAAGAAGCCATCTCAGGAAGTTCAAACAATTCAAAATCATCAAGAATAGCTGCTCGGTTAGTGGTGCTTTGA 3177 0.4032 MGRRKSKPHRSGGIILETNATAETELGKQNVVEAGKEAKDSCGDIDKPYFVEVDRSGWLSSEHLDISEVVLSDLNLREDFSGFELSEDFYQDPQYVLRFRVCNVSNVLGRIKLGHWPVLPYTDIQLEFVKRAMVDNVESCTVLLSGTFDGPDEGVSGLVHLANLKFVTLRAVLGIRLSEEITSLRVRIEVLKSAFDACESLLEGSRQLWKKSMMNVMSWLRPEIMTSEVRYGLGSCMKMEVDPQAEKGDDSCHTRKHARFDPAGFYEAIKPSKAEPMLPDDIPELLPEMRPYQRRAAFWMVEREKAREESQGERERNLFHSPLCVPVDFLDTSSKMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLACIYAHRRSASESDIIIDSVPPVNEDKKVTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHAGCVGYSPKGKSLKSKQGCESKTYKTTIAERDGQYVCQMCSELIQVTESPIASGSTLIVCPAPILPQWHDEIIRHTRPGSLKICVYEGVRDSSLSNTSPMDISDLASADIVITTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHRWCITGTPIQRKLDDLYGLLRFLKASPFDIYRWWTEVIQDPYEKGDMGAMEFTHRIFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILSRRVPGSISLSGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLIGKTKVEGEEALRRLVVALNGLAAIAIIQKEFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLAANFSLILPSKGKQFSETSAVKMTRKHFIVKDDHGLVKRCKISGNDDINLTVASAEPSQVASSLSENNLNEDLEFDSLSSSSVQSLIAECEDSKQKYLSVFSSKLTAAQQEFQNSYMQVCNAYRNSRTDQNTFWWLEALHHAEQNKDFSTELIKKIEEAISGSSNNSKSSRIAARLVVL. 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01726 1058 Coils Coil 1018 1038 - -
Seca8g01726 1058 Gene3D - 482 709 IPR038718 -
Seca8g01726 1058 SUPERFAMILY FYVE/PHD zinc finger 411 484 IPR011011 -
Seca8g01726 1058 CDD PHD_TCF19_like 416 481 - -
Seca8g01726 1058 CDD DEXQc_SHPRH 289 688 - -
Seca8g01726 1058 Gene3D - 345 397 IPR038718 -
Seca8g01726 1058 SMART PHD_3 414 482 IPR001965 -
Seca8g01726 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 465 650 IPR014001 -
Seca8g01726 1058 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 28 1054 - -
Seca8g01726 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 687 IPR027417 -
Seca8g01726 1058 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Seca8g01726 1058 SMART ultradead3 285 657 IPR014001 -
Seca8g01726 1058 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Seca8g01726 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 481 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01726 Seca-Chr8 34102737 34115040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01726 489 782 RAD5 or RAD16-like Gene Family AT5G22750 32.107 2.45e-39 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g01726 SNF2_N 2.9e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01726 K15710 - gmx:100776659 1792.7