Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01720 ATGGTTTCCTCTCAGTTCTCTGCCTTAAATAGAAATTGTTCACAGAAGCCTTTCCTGAACCCCTTGCTTCTTCCAAGTGGACCTCCTGATTTTGTGGATTCTGAATTTTCTGATGTGTTTGGTCCATCTCCTGTTGAAACCTCAATAACAGTGAGCTCTGGGGAACCTGGAAATTTGGTCCATCAAACTTTCCTGGCTCCCACAACCTTTGTTAGTCAGTCATTGGAGCTTAACAGGCTCACTTTACATGAGACAGGTGATGCATTGGATCTTGTGGAGGAAGTCTTTAGAGAAACACAGGAAGAGCTTAAGGAAGATTCTGTTAACATTAACAATGCTGCTGTAGAGGAAAATAATTTACAATTCAATAATTACTGTCTGAATCTGAATCATCAGACTGTTGGAGTTGATGATTTTGAAGTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGTAAGGTGTACCAGGTGAGGAGGACAGGTACTTCAGAAATATATGCTATGAAGGTCATGCGCAAGGATAAGATTATGCAGAGAAATCATGTTGAATATGTAAAATCTGAAAGGGATATATTGACAAAGGTGGGCCATCCATTTATTGTGCGGCTCAGATACTCATTCCAAACCAAATATAGGTTATACCTTGTGCTTGATTTTGTCAATGGTGGTCACCTATTCTTTCAACTTTATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCTGCAGAGATTATTTGTGCTGTTTCTCATCTTCATGCAAATAATATAATGCACAGGGATCTTAAACCTGAAAATATTCTTCTCGATGCAGATGGTCATGTAGTGTTAACAGATTTTGGACTGGCAAAGGAATGCAATGAGACTGCAAGGTCAAATTCTATGTGTGGAACTTTGGAGTACATGTCCCCTGAAATTGTTATAGGGAAAGGTCATGATAAGACAGCCGATTGGTGGAGTGTGGGAATTTTACTATATGAAATGCTTACAGGGAAGGTCAGGACTTAG 1011 0.4006 MVSSQFSALNRNCSQKPFLNPLLLPSGPPDFVDSEFSDVFGPSPVETSITVSSGEPGNLVHQTFLAPTTFVSQSLELNRLTLHETGDALDLVEEVFRETQEELKEDSVNINNAAVEENNLQFNNYCLNLNHQTVGVDDFEVLKVVGQGAFGKVYQVRRTGTSEIYAMKVMRKDKIMQRNHVEYVKSERDILTKVGHPFIVRLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARFYAAEIICAVSHLHANNIMHRDLKPENILLDADGHVVLTDFGLAKECNETARSNSMCGTLEYMSPEIVIGKGHDKTADWWSVGILLYEMLTGKVRT. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01720 336 Gene3D Phosphorylase Kinase; domain 1 137 218 - -
Seca8g01720 336 SUPERFAMILY Protein kinase-like (PK-like) 119 333 IPR011009 -
Seca8g01720 336 CDD STKc_AGC 145 333 IPR045270 GO:0004674|GO:0005524
Seca8g01720 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca8g01720 336 FunFam Non-specific serine/threonine protein kinase 220 304 - -
Seca8g01720 336 ProSiteProfiles Protein kinase domain profile. 139 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01720 336 PANTHER RIBOSOMAL PROTEIN S6 KINASE 107 333 - -
Seca8g01720 336 SMART serkin_6 139 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01720 336 ProSitePatterns Protein kinases ATP-binding region signature. 145 168 IPR017441 GO:0005524
Seca8g01720 336 Gene3D Transferase(Phosphotransferase) domain 1 219 334 - -
Seca8g01720 336 FunFam Non-specific serine/threonine protein kinase 136 241 - -
Seca8g01720 336 Pfam Protein kinase domain 139 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01720 Seca-Chr8 33644665 33647787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01720 1 333 AGC Kinase Gene Family AT3G08720 63.265 1.72e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Seca8g01720 Pkinase 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01720 K04688 - gmx:100803509 502.286