Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01717 ATGGCAGGCAACCTTTATTATAGCTTGTGTTCCTTTTATTGTTTTCTCCTTCTTCTCATAACGGTATCTCACGCCCAGCCAAACTTCTATCCCTCTTGTTCCAACGATAAAGGAAACTACACAGCCAATAGCACCTATCGTAACAACCTCAACACCCTTTTGTCTAGTCTTTCCTCCAAAACAGAAATCGATTACGGTTTCTACAATTTCTCTTATGGCGAAGACACTGACAAAATATACGCAATTGGACTATGCAGAGGAGATGTTCAACCTGACGATTGCCGTAACTGCCTCAACAATTCAAGAGTCCTTCTCACGCAGAATTGTCCAAATCAGAAAGAAGCTATTGGTTGGATTGATAACTGCATGTTGCGTTACTCAAACCGCTCAATATTTGGCATCATGGAAACTCTACCTGGGCTTTATATGTGGAACACAAATAATGCAACACAGGTGGATGAGTACAACCAAGTTCTCGGGAACTTGTTGCGTAGCATAAGAGACAAAGCTACATCAGGGGACTCAAGGCTTAAGTATGCTACAGGAAACGTTACTGGTCCGAATTTTCAAAACATATATGGGCTTATGCAGTGCACGCCTGATCTATCTGACTTAAAATGCGATGAATGCTTGGGTGGGGCTATCTCAGATCTCCCAGGATGTTGTAATAACAAGGTAGGAGGTAGAGTTATTAGACCCAGTTGTAATATTAGATATGAAACATACCGCTTCTATCAAGCTACTGCAGAAGCACCATCACCGCCGTCCATCAATAACACTTCCTCGGGAAAAAGCAACACATCACTGATTGCCATTGCCATAGCAGTCCCAGTTGCAGTTGTTGTTTTGGTGCTCAGTATTATCTGCACCTATTTACGAATGAAGAAGCCAAGGGAAATTTCAAAAAGTAAGTCTAAGGCCTCTAAGAATGGATTTCCTTCGGAAGATGATGATGAAATTAAAACCAATGAGTCATTGCAATTTAACTTTGACACCATACGACTTGCTACAAATGACTTTTCTGATTCTAATAAACTTGGAGAAGGTGGATTCGGAGCTGTTTACTGGGGTAGGCTCTCTAATGGACAAATGATTGCTGTCAAAAGGTTGTCAATGAATTCCAACCAAGGAGATGTGGAATTTAAGAATGAAGTGCTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTTAGGCTACTTGGTTTCAGTCTAGAAGGGAGAGAAAGACTATTAGTCTATGAATTTGTTCCTAATAAAAGTCTTGACTACTTTATATTTGATCCAATAAAGAAAGCACAATTGGATTGGGAAAAGCGCTACAAAATTATTGGAGGTATTGCTCGAGGCCTTCTTTACCTTCACGAGGATTCACAACTACGTATTATCCATCGTGATCTCAAAGCAAGCAATATCCTTTTAGATGAAGTGATGAATCCAAAGATATCAGATTTTGGCATGGCAAGACTGATTGTTGTGGATCAGACACAAGTAAATACGAGTAGAATTGTTGGAACCTATGGATACATGGCACCAGAGTATGCAATGCATGGACAATTTTCAGTGAAATCAGATGTCTTCAGTTTTGGTGTACTAGTTCTTGAGATAATAAGTGGCCAAAAAAATAGTGGCATTCGTCATGGGGAGAGCGTGGAGGATCTATTGAGCTTCGCATGGAGAAATTGGAGGGAGGGGACAGCTACAAATATTATAGATCCATTATTAAACAACTGTCCACGAAATGAAATGATCAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATTTAGCCAACAGACCAACTATGGCTACCATTGCACTCATGCTTAACAGTTATTCTCTCACTCTCCCTGTACCATCAGAACCTGCATTTTTTGTGGACAGTAGAACTAGAAGCCTTCCAGACATGCAGTTGTGGGAAGATAATTCAGGGGCAACAAGATCAAGTGAATCCACAACTAAATCAGTTCGAGAATCGGTAAATGAGGCTTCAATTACCGAGCTATATCCTCGTTAG 2019 0.4032 MAGNLYYSLCSFYCFLLLLITVSHAQPNFYPSCSNDKGNYTANSTYRNNLNTLLSSLSSKTEIDYGFYNFSYGEDTDKIYAIGLCRGDVQPDDCRNCLNNSRVLLTQNCPNQKEAIGWIDNCMLRYSNRSIFGIMETLPGLYMWNTNNATQVDEYNQVLGNLLRSIRDKATSGDSRLKYATGNVTGPNFQNIYGLMQCTPDLSDLKCDECLGGAISDLPGCCNNKVGGRVIRPSCNIRYETYRFYQATAEAPSPPSINNTSSGKSNTSLIAIAIAVPVAVVVLVLSIICTYLRMKKPREISKSKSKASKNGFPSEDDDEIKTNESLQFNFDTIRLATNDFSDSNKLGEGGFGAVYWGRLSNGQMIAVKRLSMNSNQGDVEFKNEVLLVAKLQHRNLVRLLGFSLEGRERLLVYEFVPNKSLDYFIFDPIKKAQLDWEKRYKIIGGIARGLLYLHEDSQLRIIHRDLKASNILLDEVMNPKISDFGMARLIVVDQTQVNTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIISGQKNSGIRHGESVEDLLSFAWRNWREGTATNIIDPLLNNCPRNEMIRCIHIGLLCVQENLANRPTMATIALMLNSYSLTLPVPSEPAFFVDSRTRSLPDMQLWEDNSGATRSSESTTKSVRESVNEASITELYPR. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01717 672 Gene3D - 140 244 IPR038408 -
Seca8g01717 672 Gene3D - 28 130 IPR038408 -
Seca8g01717 672 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Seca8g01717 672 MobiDBLite consensus disorder prediction 637 672 - -
Seca8g01717 672 Pfam Protein tyrosine and serine/threonine kinase 343 607 IPR001245 GO:0004672|GO:0006468
Seca8g01717 672 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 670 - -
Seca8g01717 672 CDD STKc_IRAK 346 611 - -
Seca8g01717 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Seca8g01717 672 SMART serkin_6 340 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01717 672 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Seca8g01717 672 Pfam Salt stress response/antifungal 147 242 IPR002902 -
Seca8g01717 672 FunFam cysteine-rich receptor-like protein kinase 10 416 617 - -
Seca8g01717 672 Gene3D Transferase(Phosphotransferase) domain 1 416 617 - -
Seca8g01717 672 FunFam Cysteine-rich receptor-like protein kinase 17 311 415 - -
Seca8g01717 672 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Seca8g01717 672 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Seca8g01717 672 MobiDBLite consensus disorder prediction 637 663 - -
Seca8g01717 672 FunFam Cysteine-rich receptor-like protein kinase 10 139 244 - -
Seca8g01717 672 ProSiteProfiles Protein kinase domain profile. 340 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01717 672 Gene3D Phosphorylase Kinase; domain 1 314 415 - -
Seca8g01717 672 SUPERFAMILY Protein kinase-like (PK-like) 325 637 IPR011009 -
Seca8g01717 672 ProSiteProfiles Gnk2-homologous domain profile. 137 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01717 Seca-Chr8 33540333 33545139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01717 12 672 Receptor kinase-like Gene Family AT4G21410 49.781 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g01717 PK_Tyr_Ser-Thr 5.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01717 - - tpra:123920197 915.605