Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01714 ATGGAAACTTTGGATCGTAATTCAGACCAATACGCCACCGTTTCTTCTAATTCAACATCTTCTTCTGGAGGTGTTAATAGTAATGATAACAATGATAATAGTAATGGAAGTGTAACCTGGTATGGGATGAGGTTGCCTTCTGTTAGCCCTTTACGTTCCCCACTTTCCTTTCTATTGGATTACTCTGGCATTCTTCGTTCAACCCATGATTCTGAGGATGTGATTGTTAACAATGGAGTTGCTGCTTCGGAATTACGGTCTCAGCTTCAAATGCAATCGTTTGATGATGCTCCTAATGCTGCTGCTGGGACCAGTGCAGGGGAAGTTGCAATAAGGATAATTGGAGCTGGAGAGCATGATCAGAACCAGCTTGGAGAAATGGGGTATAATGATTGTGATGATCTGATTGGTGAGAGAGGTAGAATGCCTGCATTGGATGATGATGCTGAGGGTCATGGTGGAATTGCGGCTAGTGAGAGGGTTCCTCTGGTGTCTTCAGCTTCGTCGTCGTCATTGGCTGGTAGTGGACAGGTTGATGGGGATGCTGCTGGGAATGGCACAGAAAGTAACAGCAGGGATTCCTCATCCTACCAGAGGTATGATATCCAGCAGGTTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGCTGTTGGTTGTGTTCATCCGACAGCATTTACAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCGAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGAGATAGGAAAGTCTCTGTCCTTATTGGTGTCTCTTTTGCTTTCATTCTTCACGTGATGTGCATTTACTGGTGGTATCAAAATGATGACCTTTTATACCCATTGGTCATGTTTCCTCCAAGACCAACTCCCTTCTGGCATGCAGTATTCGTCATCTTGGTCAATGATATATTGGTGCGGCAAGCTGCAATGGCTTTCAAGTGTTTCCTTCTTATATATTACAAAAATGGCAAAGGTCACAACTTCCGTCGGCAGGCTCAAATGTTAACTCTGGTTGAATACACGCTGCTGTTGTATCGTGCCTTGTTGCCAGCACCGGTTTGGTACCGGTTTTTCTTGAATAGGGAATTTGGCAGTCTCTTTTCATCACTGACAACAGGGTTGTATTTAACTTTCAAGCTAACATCTGCTGTTGAGAAGGTATGTTTTCACTCTTTAAAATTAGTGTGCATATTCTGTATTCAAAGATATTTGTTTATGGTCCAATGCTTCATTTCTGCCTTAAAAGCCTTATCAAGAAAGGAAATTAATTATGGAGTTTATGCCACAATGGAACAGGTTAATGCTGCTGGTGACCTATGTGCCATATGCCAGGAGAAAATGCATGCCCCTATCTTGTTGCGCTGTAAACACATTTTCTGCGAAGAGTGTGTATCGGAGTGGTTTGAGAGAGAAAGAACTTGCCCACTATGCAGAGCATTGGTTAAACCAGCTGATCTTCGGACCTTTGGAGATGGATCAACAAGTCTGTTTTTCCAGCTGTTTTAA 1533 0.4266 METLDRNSDQYATVSSNSTSSSGGVNSNDNNDNSNGSVTWYGMRLPSVSPLRSPLSFLLDYSGILRSTHDSEDVIVNNGVAASELRSQLQMQSFDDAPNAAAGTSAGEVAIRIIGAGEHDQNQLGEMGYNDCDDLIGERGRMPALDDDAEGHGGIAASERVPLVSSASSSSLAGSGQVDGDAAGNGTESNSRDSSSYQRYDIQQVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLIGVSFAFILHVMCIYWWYQNDDLLYPLVMFPPRPTPFWHAVFVILVNDILVRQAAMAFKCFLLIYYKNGKGHNFRRQAQMLTLVEYTLLLYRALLPAPVWYRFFLNREFGSLFSSLTTGLYLTFKLTSAVEKVCFHSLKLVCIFCIQRYLFMVQCFISALKALSRKEINYGVYATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01714 510 ProSitePatterns Zinc finger RING-type signature. 464 473 IPR017907 -
Seca8g01714 510 ProSiteProfiles Zinc finger RING-type profile. 449 487 IPR001841 -
Seca8g01714 510 MobiDBLite consensus disorder prediction 1 33 - -
Seca8g01714 510 CDD RING-HC_RNFT1-like 447 487 - -
Seca8g01714 510 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 17 403 IPR044235 GO:0061630|GO:1904294
Seca8g01714 510 Pfam Zinc finger, C3HC4 type (RING finger) 447 490 - -
Seca8g01714 510 MobiDBLite consensus disorder prediction 168 195 - -
Seca8g01714 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 497 IPR013083 -
Seca8g01714 510 SMART ring_2 449 486 IPR001841 -
Seca8g01714 510 SUPERFAMILY RING/U-box 447 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01714 Seca-Chr8 33470891 33479364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01714 51 510 C3H Transcription Factor Family AT5G01960 58.511 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01714 - K22379 gmx:100784614 592.038