Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01681 ATGACCTTTGCTAGTGGCATAACAAAACCCAGTTTTTTTACTGTCCAAACGGAAATGCCTATTCTAACATTTGGTCATTCTAAGTTGAGTGCTACCCTTGCTCTTCGGTTGCCATATAACTGCTTCAGGAGGATGGGGTTGGTTACAAAGCTTCAGTATTCTGTTGCTAATAGGACATCAACTTCTAGCTCCATTGATTCGCCGGCATCCAAACCGAAATCCGGTCCGGTGAGTAGGAGGCGTGGAGGTGCCTCACCCTTGTATATTCGTCCTAGTTTATTTGAAATGAAGAAAGATAAGGAGAAAATGCGTGAAGAGGTTTATGAGTTCTTGCGTGGAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGTGTGGATTTTCTTCATAGTTTGGGGCTCACAATTGAAGACATTAATAACTATCCACTTGTTCTTGGCTGCAGTGTCAAGAAAAACATGATTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTCAGGAAATCCACGTTCACGCAGTTCTTGCAGAGGTACCCTCAAGTGCTCCATGCCAGTGTGGTTGTAGATCTTGTGCCGGTGGTCAAGTATCTTCAAGGGATGGATATCAAGCCCGATGATATTCCTCGTGTTCTTGAGAGGTACCCTGAAGTTCTAGGGTTTAAACTTGAGGGAACCATGAGCACATCGGTTGCTTATTTGATTGGAATTGGTATGGGAAGAAGAGAAATTGGAGGTGTCTTAACTAGATATCCAGAGATTTTAGGGATGCGGGTTGGTAGAATCATCAAGCCTTTTGTTGAATATCTGGAAAACTTGGGAATTCCAAGGCTAGCTGTTGCTAGACTGATAGAGAGAAAACCTTACATTCTTGGATTTGATCTGGATGAGAAGGTGAAGCCAAGTGTGAAATCCCTTGAAGAGTTTAATGTTAGGCGAACATCACTTCCCTCTGTAATTGCTCAGTATCCTGACATCGTTGGAACTGACTTAAAGCCAAAGCTTGTCAACAAGAGAAATGTACTTAATGGTGTACTTGATTTGGATCCTGAGGATTTTGGCCGAATTGTTGAGAAGATGCCACAGATAGTTAGCCTCAGTAGTAAACCCATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGGTTTTCCTTGCAGCATATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGACATCATGAAGCTTAACTTTGATTTCTTCCAAAGGGAGATGGAAAGGCCTTTGGAAGACTTGGTTACTTTCCCCGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAAGATGGTTGCCAAGAAAGGATTGAAGTGTTCTCTGGCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGAGTATGACACTATTGACATGGAAGAAATGGAAATGGAACCATCATTTGACATGAATTCATTGATGCAACCAAGGAGTGATGAATCAGATTCTGATTATGAAGACAGTGATGATGATTATGATTAG 1566 0.4157 MTFASGITKPSFFTVQTEMPILTFGHSKLSATLALRLPYNCFRRMGLVTKLQYSVANRTSTSSSIDSPASKPKSGPVSRRRGGASPLYIRPSLFEMKKDKEKMREEVYEFLRGIGIVPDELDGLELPVTVDVMRERVDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLQRYPQVLHASVVVDLVPVVKYLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGMGRREIGGVLTRYPEILGMRVGRIIKPFVEYLENLGIPRLAVARLIERKPYILGFDLDEKVKPSVKSLEEFNVRRTSLPSVIAQYPDIVGTDLKPKLVNKRNVLNGVLDLDPEDFGRIVEKMPQIVSLSSKPMLKHVDFLKDCGFSLQHMRKMIVGCPQLLALNIDIMKLNFDFFQREMERPLEDLVTFPAFFTYGLESTIKPRHKMVAKKGLKCSLAWMLNCSNEKFEQRMEYDTIDMEEMEMEPSFDMNSLMQPRSDESDSDYEDSDDDYD. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01681 521 Pfam mTERF 169 477 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 MobiDBLite consensus disorder prediction 60 84 - -
Seca8g01681 521 Gene3D Transcription termination factor 3, mitochondrial 271 486 IPR038538 -
Seca8g01681 521 Gene3D Transcription termination factor 3, mitochondrial 89 197 IPR038538 -
Seca8g01681 521 MobiDBLite consensus disorder prediction 493 521 - -
Seca8g01681 521 SMART mt_12 183 214 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 431 462 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 364 394 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 327 359 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 219 250 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 SMART mt_12 399 430 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 FunFam Transcription termination factor mterf4, chloroplastic 133 270 - -
Seca8g01681 521 PANTHER CGI-12 PROTEIN-RELATED 168 388 IPR003690 GO:0003690|GO:0006355
Seca8g01681 521 FunFam Transcription termination factor MTERF4, chloroplastic 271 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01681 Seca-Chr8 32096472 32099072 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca8g01681 mTERF 6.2e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01681 K15032 - gmx:100785223 817.764