Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01680 ATGGGTGCCGTCGATTGCTGTGCGCCGCCGCGTAGGGAGGAGATAGCGGTGCTGTCTCTCAACACTTTACCTTTGGGTTTCCGATTCCGTCCAACCGATGAGGAGCTCATCGATTACTACCTGCGCTTGAAGATCAATGGAAATGGAGATGATGTTTGGGTTATCCGTGAAATCGATGTCTGTAAATGGGAACCTTGGGATTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTTTTCTGTCCACAGGACCGCAAGTACCCAAATGGGCACAGGTTGAACCGAGCAACAAGTCATGGGTATTGGAAGGCAACGGGCAAGGATCGCAAGATTAAGTCTGGTAACACCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACACTGGTCGTGCTCCCAAAGGGAAGAGAACCAATTGGGTTATGCATGAGTACAGGCCTACACTGAAGGAGCTTGATGGTACCAATCCTGGACAGAATCCGTATGTCCTTTGTCGCTTATTCAAAAAAAATGATGAGACTCTTGAAGGCTCGAACTGTGATGAAGTGGACCAGACTACTTCAACTCCTACTACTGCCAATTACTCTCCAGAAGAAATACTATCTGATCCAACTCTGGTTCCTGTATCTTCCTCCCAAGCTACAGAAGATGATAAGCAATTAGCAGTTATCAATGAGAACTCTGAGGAAGCAATATCTAACATTATAACTCCAGCTGATTGCCATAGTGATGGATGTGATGCTCATGATGCCAGAAATCAAATTGTAGAACCAGCTATAGAGGAGGATCAGCCATTGAACTTGGACATATTTTATGACCTAACAAATGAGCAATTGGATGACAAATTATTCTCTCCAGTCCATGCGCATTTTCCATCAGGATTTTATTATCAACCTAACAATGAATTACAACTTCAGTATGGTACCAATGAGACGACTATTTCAGACTTTATTAGCTCAGTTGTTAATTGGGATGAGTTCTCCCATGAGGAATCTAGCAGTCTAGAGCTGAACTCAGCATTGATTAATGTTAAGGACAATGGATCATGCAGTGACTCAGATGTGGACATGGCCAATATGACGTCTTCTTGTATGCTGCAGCATCTGCAACCATTACAGGCTGCTTATCCAAATGAAGCAATTGAGCAAACAAGCAATGTGGGATTATTTCAGAACAATTCCCAAATGGCTTTCTCAACTGATGTTAGTATGGGTCAAATGTCCAGTGTGGTCAATGATTATGAGCAATCAAGGAACTTTGATATGGCTGTTCATGGTGATACTGGAATCAGGATAAGGAGTCGACAAGGACGAATTGAGCAGCCAAACACGAACCCAATGATACAAGCGCAAGGTATTGCACCAAGGAGAATCCGATTGGGAGGATTTGTTACACGTCAGCGTGGTTCCAATGAGACAGAAAAGGATGGAAGTTGTGCACCAGAAGACCATAATTCAAAAATCACCATTGCTGGGGAGAGGAAAGCTTCAGAAAACCAACTTGCTACTGAGAGTGCCACGGTTACTAATGACACGGATGAACCGGAGAAGACATCTCCTGAGTCAGCTGACACAAGAAAGATTTGTCAAGAAGATGTTGCAACTGCAGAATCCATGTTGGAGTCAAAAAACCTTCTATTGGGCAGAAGGGTCCGTTACACGGCAAAGGTTTCCTCCAATCGCGCCATGTGGTCTACTGTTTTTGCAGTTTCTGCCATTGTACTGGCCTCACTACTATTGCTTGTCAATATATGGGGATATCTTAGATCTAAAACTGCTTACTAG 1794 0.4365 MGAVDCCAPPRREEIAVLSLNTLPLGFRFRPTDEELIDYYLRLKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRKIKSGNTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKNDETLEGSNCDEVDQTTSTPTTANYSPEEILSDPTLVPVSSSQATEDDKQLAVINENSEEAISNIITPADCHSDGCDAHDARNQIVEPAIEEDQPLNLDIFYDLTNEQLDDKLFSPVHAHFPSGFYYQPNNELQLQYGTNETTISDFISSVVNWDEFSHEESSSLELNSALINVKDNGSCSDSDVDMANMTSSCMLQHLQPLQAAYPNEAIEQTSNVGLFQNNSQMAFSTDVSMGQMSSVVNDYEQSRNFDMAVHGDTGIRIRSRQGRIEQPNTNPMIQAQGIAPRRIRLGGFVTRQRGSNETEKDGSCAPEDHNSKITIAGERKASENQLATESATVTNDTDEPEKTSPESADTRKICQEDVATAESMLESKNLLLGRRVRYTAKVSSNRAMWSTVFAVSAIVLASLLLLVNIWGYLRSKTAY. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01680 597 SUPERFAMILY NAC domain 18 173 IPR036093 GO:0003677|GO:0006355
Seca8g01680 597 MobiDBLite consensus disorder prediction 495 512 - -
Seca8g01680 597 MobiDBLite consensus disorder prediction 467 530 - -
Seca8g01680 597 MobiDBLite consensus disorder prediction 513 530 - -
Seca8g01680 597 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Seca8g01680 597 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
Seca8g01680 597 MobiDBLite consensus disorder prediction 472 494 - -
Seca8g01680 597 MobiDBLite consensus disorder prediction 179 220 - -
Seca8g01680 597 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Seca8g01680 597 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 270 - -
Seca8g01680 597 FunFam Nac domain-containing protein 86 32 176 - -
Seca8g01680 597 MobiDBLite consensus disorder prediction 183 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01680 Seca-Chr8 32003766 32007462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01680 15 463 NAC Transcription Factor Family AT4G35580 45.032 1.81e-103 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g01680 NAM 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01680 - - gmx:100778903 843.958