Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01664 ATGGGGGAGGGAGAGACCTTAGTGGAAGCAGAAGGAGAAGGGAGGGAGACAACAACAACATTAACAACATGGAACCTAGGAAAACACAGCCAGATAGTGCACTTATCGGAGAAGCTGATAAATGGGAACCTTAACTCCAAGATTGAGGCTGCCAGAGAAATCAGAAGGCTCGTTCGCAAATCTTCATCCTCCAAGACACGCTCCAAACTCGCCGCTGCTGGTGTCATTCAACCCCTTATCTTCATGCTCTCTTCTTCTAATCTCGATGCCCGTGAATCCTCTCTCCTTGCTCTCCTCAACCTCGCTGTTCGCAACGAACGAAACAAGATCAAAATAGTGACAGCTGGTGTCATGCCTCCTCTGGTGGAGCTCCTCAAGATGCAAAATAGTAGTATACGAGAATTAGCTACGGCAGCAATCTTGACACTCTCAGCTGCTGCACCCAACAAGCCCATTATTGCTGCTTCTGGAGCTGCACCTCTCCTTGTTCAGATTCTCAAATCAGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCCCTCCATAACCTTTCCACTAGCATTGAGAATTCCATTGAACTTCTTGATGCTAGTGCTGTTTCCCCTCTTATCAACCTCCTTAAAGAGTGCAGGAAGTATTCCAAGTTTGCAGAAAAAGCTACAGCACTACTTGAAATCCTTTCCAACTCTGAAGAGGGACGAAACGCAATCTCAATTGCAGATGGTGGAATTTTAACCCTAGTAGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAGCATGCTGTTGGATCATTGCTATCATTATGTCTAAGCTGCCGGGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCGATTCCGGGTCTGTTACGGCTTACAGTGGAGGGAACAGCTGAAGCTCAAGATAGAGCACGTGTGCTTCTGGATTTACTCAGAGATTCTCCACCAGAAAAAAGACTAGCCTCCTCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAAAGGGTAGATGGAGTAGATAAAGCTGCTGAAACTGCCAAACGATTATTGCAAGATATGGTTCAAAGGAGCATGGAACACAGCATGAACTGCATCCAGCATAGAGCTGCATCTTGTACTCCTTCTGTGGTTCCATCCACTTGA 1146 0.4564 MGEGETLVEAEGEGRETTTTLTTWNLGKHSQIVHLSEKLINGNLNSKIEAAREIRRLVRKSSSSKTRSKLAAAGVIQPLIFMLSSSNLDARESSLLALLNLAVRNERNKIKIVTAGVMPPLVELLKMQNSSIRELATAAILTLSAAAPNKPIIAASGAAPLLVQILKSGSVQGKVDAVTALHNLSTSIENSIELLDASAVSPLINLLKECRKYSKFAEKATALLEILSNSEEGRNAISIADGGILTLVETVEDGSLVSTEHAVGSLLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLASSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEHSMNCIQHRAASCTPSVVPST. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01664 381 SUPERFAMILY ARM repeat 32 337 IPR016024 -
Seca8g01664 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 242 IPR000225 GO:0005515
Seca8g01664 381 Gene3D - 236 373 IPR011989 -
Seca8g01664 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 158 IPR000225 GO:0005515
Seca8g01664 381 PANTHER U BOX DOMAIN-CONTAINING 31 314 - -
Seca8g01664 381 Pfam Armadillo/beta-catenin-like repeat 148 185 IPR000225 GO:0005515
Seca8g01664 381 Pfam Armadillo/beta-catenin-like repeat 105 144 IPR000225 GO:0005515
Seca8g01664 381 SMART arm_5 187 229 IPR000225 GO:0005515
Seca8g01664 381 SMART arm_5 146 186 IPR000225 GO:0005515
Seca8g01664 381 SMART arm_5 63 103 IPR000225 GO:0005515
Seca8g01664 381 SMART arm_5 104 145 IPR000225 GO:0005515
Seca8g01664 381 FunFam U-box domain-containing protein 4 9 372 - -
Seca8g01664 381 Gene3D - 27 147 IPR011989 -
Seca8g01664 381 Gene3D - 148 235 IPR011989 -
Seca8g01664 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Seca8g01664 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01664 Seca-Chr8 31760934 31767121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01664 30 314 U-box Gene Family AT3G54790 39.161 4.17e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01664 K08332 - gmx:100785760 593.578