Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01616 ATGGTAAGAGGAGGAAGTCATGGTGGGAATGGTGTTATAAAAACCAATAACCCTTCCATCATGGATCGATTTTCAGGTCCTCCTTTGACAGCCATAGACAGATTCTTATGGGGTCAACAGAGCCACTTCTATCACCAACAACAGGTAGAGAACATTGCAAGGAGCAACAACAATGCAAGTGTTTTTGCTGAGGAGTTCTTCACTTTTCCTTACTCAACCTATGGTTTTCTTTGGCCAAACAGTACTCAAGAATCAAGCTTTGTTGATGGGGTCTTAGCAAAGGAAGAGGCTTTGAAGTGGAAAAACATCAACCAACAAAACCCCACATTGTGCTTGAAAGATATGAAAGTTTCAGGTAGGAATGCAAAAGTGGTGGGAAGGAGAAATAAGAAAGAGTCTAATAATGTATCTTTGATCAAAGGACAGTGGACTGCTGAAGAAGACAGGAAACTTTTAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGCTGGCAAGCAGTGTAGAGAGAGATGGCATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATATTAGTGGATACACATTCCAGGATTGGAAATCGTTGGGCTGAGATAGCAAAGCTAATTCCAGGAAGAACAGAGAATGCAATAAAGAATCATTGGAATGCAACAAAAAGGAGGCAGAATTCAAAGAGAAAGAACAAGAAGACAGAGAGTACTACTACTAATGGAAAGCCAAAGTCCTCTATACTTGAAGACTATATCAAAAGCAAGAGTAGTACTGTTACCACCACTACATTGCCCTCTGTTAGCTCCGAACAGGACCCTGCAGCATCAACAAACCAATTAAGCCTTTCACTCTCTGAACCCTCTGAGTCTTTTACCAATGAGCTTCTCTTCATGCAACAAATTTTCACTGAGAATAATCAGAATCAGCAATCACTTGTCAATGTTGAAGCCTCTAAGCACTACAATAAGTCCTCAAGCTCCTACTTGGACTTTTATGGACATAATGTTGTTGAGGATGTGACAGAGTGTGGGGTTATCTATTCCATTCAATACCCTGCTGGTAACATGCAATTGGATGATAATCTTCTCCCTAGAGAGACTCCTACCTCCTCCATAAATTACCTTCCTTCAGATCTTTACCTCTCTCACTTGTTGAATCTATAG 1209 0.4045 MVRGGSHGGNGVIKTNNPSIMDRFSGPPLTAIDRFLWGQQSHFYHQQQVENIARSNNNASVFAEEFFTFPYSTYGFLWPNSTQESSFVDGVLAKEEALKWKNINQQNPTLCLKDMKVSGRNAKVVGRRNKKESNNVSLIKGQWTAEEDRKLLRLVKQYGERKWAQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVDTHSRIGNRWAEIAKLIPGRTENAIKNHWNATKRRQNSKRKNKKTESTTTNGKPKSSILEDYIKSKSSTVTTTTLPSVSSEQDPAASTNQLSLSLSEPSESFTNELLFMQQIFTENNQNQQSLVNVEASKHYNKSSSSYLDFYGHNVVEDVTECGVIYSIQYPAGNMQLDDNLLPRETPTSSINYLPSDLYLSHLLNL. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01616 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 241 IPR017930 -
Seca8g01616 402 CDD SANT 194 237 IPR001005 -
Seca8g01616 402 FunFam Transcriptional activator Myb isoform A 139 192 - -
Seca8g01616 402 PANTHER MYB PROTEIN-RELATED 122 271 - -
Seca8g01616 402 MobiDBLite consensus disorder prediction 228 263 - -
Seca8g01616 402 Pfam Myb-like DNA-binding domain 143 200 - -
Seca8g01616 402 SMART sant 139 188 IPR001005 -
Seca8g01616 402 SMART sant 191 239 IPR001005 -
Seca8g01616 402 MobiDBLite consensus disorder prediction 277 298 - -
Seca8g01616 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 190 IPR017930 -
Seca8g01616 402 ProSiteProfiles Myb-like domain profile. 135 186 IPR001005 -
Seca8g01616 402 Gene3D - 139 191 - -
Seca8g01616 402 CDD SANT 143 186 IPR001005 -
Seca8g01616 402 ProSiteProfiles Myb-like domain profile. 187 237 IPR001005 -
Seca8g01616 402 Gene3D - 193 264 - -
Seca8g01616 402 SUPERFAMILY Homeodomain-like 137 233 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01616 Seca-Chr8 30621902 30624187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01616 25 401 MYB Transcription Factor Family AT5G58850 39.568 2.71e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g01616 Myb_DNA-bind_6 5.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01616 K09422 - aprc:113874412 405.601