Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01596 ATGCAAATCAACAATATCCACTCAGAGTCAGAGGACACCATGAATGAAGACTTGGAGAACAACAACACAGAGACACCACAGGACATGTCACATTCGCTGGTGAAAAAGAAGTCAGATCCAGTTCTGGTCACAAATAGCAATGCTCGTTTTCAAATGCTTAGAAGTTTCATGACAAATTTGCATTTGGTCATTCTTGCCACTAAGCTTGTGGTGCTTTTTCCGGCAGTCCCGTTAGCCGTTGTTGCAAATTTTTATAACTTTGGAAGGCCTTGGATATTTGCTTTCAGCCTGCTTGGACTAGCTCCATTAGCTGAACGTGTCAGCTTCCTCACTGAGCAAATTGCATATTATACCGGCCCAACAGTTGGAGGGCTTTTGAATGCAACATGTGGTAATGCAACGGAGATGATCATATCATTATTAGCACTTCACAAGAACAAAATACATGTTGTCAAGTTCTCCCTGCTCGGTTCCATTCTCTCAAACCTTCTCTTGGTTCTTGGTAGCTCACTCCTCTGTGGTGGCTTAGCTAATCTTAAAAGGGAGCAAAGATATGACAGAAAACAGGCAGATGTAAATTCACTGCTTTTGTTGTTGGGGTTGCTATGCCATTTGCTGCCATTACTGTTCAGATATGCGTTGGCAGGGGGCAATTACTCTGTAGCCACTTCAACTCTTCAATTGTCAAGAGCATGCAGCATTCTTATGCTTCTAGCATATGTTGCTTATATCGTCTTCCAATTAAAAACTCATCGCAAATTGTTTGATGCACAAGAGGTGATCATGTGTTGTGTTTTGCCGTTTGATCTGCAGGAAGAAGATGATGAAGAGAAGGCATTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTGGGTATGACACTTGTCATATCTTTGCTTTCTGAATATGTTGTTGGAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGCTACCAATTGTTGGGAACGCTGCAGAACATGCTGGTTCAATCATATTTGCTTTTAAAAACAAGTTGGATATATCTTTGAGTGTTGCAATGGGATCTGCCACTCAAATTTCAATGTTTGTGGTTCCATTAAGTGTGGTAGTTGCATGGATAATGGGAATAAGAATGGATCTGGACTTCAATCTTCTTGAAACTGGATGTCTTGCTTTTGGAATTATAGTTACAGCATTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTTGTTCTTACTCTATGTTACATTGTCATTTCTGCATGTTTTTTTGTTCTCAAAACTCCACTAACCAACCAATATCCTAAGGTCAATTTTGGAGCTAAACTATCCTTTGATGACACCTCCACTTGA 1368 0.4028 MQINNIHSESEDTMNEDLENNNTETPQDMSHSLVKKKSDPVLVTNSNARFQMLRSFMTNLHLVILATKLVVLFPAVPLAVVANFYNFGRPWIFAFSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHKNKIHVVKFSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLLLLLGLLCHLLPLLFRYALAGGNYSVATSTLQLSRACSILMLLAYVAYIVFQLKTHRKLFDAQEVIMCCVLPFDLQEEDDEEKALIGFWSAFTWLVGMTLVISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLSVAMGSATQISMFVVPLSVVVAWIMGIRMDLDFNLLETGCLAFGIIVTAFTLQDGTSHYMKGVVLTLCYIVISACFFVLKTPLTNQYPKVNFGAKLSFDDTST. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01596 455 Gene3D - 265 429 IPR044880 -
Seca8g01596 455 Gene3D - 120 264 IPR044880 -
Seca8g01596 455 MobiDBLite consensus disorder prediction 1 31 - -
Seca8g01596 455 NCBIfam calcium/proton exchanger 74 429 IPR004798 GO:0006816|GO:0015369
Seca8g01596 455 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 19 432 IPR004713 GO:0006812|GO:0008324|GO:0016020
Seca8g01596 455 FunFam Vacuolar cation/proton exchanger 273 430 - -
Seca8g01596 455 Pfam Sodium/calcium exchanger protein 91 248 IPR004837 GO:0016020|GO:0055085
Seca8g01596 455 Pfam Sodium/calcium exchanger protein 286 426 IPR004837 GO:0016020|GO:0055085
Seca8g01596 455 FunFam Vacuolar cation/proton exchanger 120 262 - -
Seca8g01596 455 NCBIfam calcium/proton exchanger 55 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01596 Seca-Chr8 30092241 30097840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01596 24 434 Antiporters AT2G38170 65.459 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01596 K07300 - gmx:100816844 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01596 8 30092241 30097840 Seca8g01596 8 30092241 30097840 ECH
Seca8g01596 8 30092241 30097840 Seca8g01596 8 30092241 30097840 PCT