Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01582 ATGTGCAGTGGTTCCAAGAGGAAAACTTCTCAAATTGGTTTGGTCATGGAGAATGAATATGGAAGAATAGAAGGGCTGCATCATAAAATTTCAGCTTTGCTTGAATTTTCAGCTACAGATGACCTGATTGGTTTCAAAGATGCTGTTGAAAAGGAGGGTCATGATGTTGATGAGGTGGGTTTATGGTATGGAAGGAGGATTGGCTCTAATAAATTGGGTTATGAAGAAAGGACACCTCTCATGGTTGCTGCTATGTTTGGAAGCCTAGGTGTATCAACTTATATTCTTGGAACGGGTCGTGTTGATGTTAACCGGCCTAGTGGATCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGTGTTCTGTTGCTTCCCCTGAGGTTGTCAAGCTTTTGCTTGATTCATCTGCTGATGTTAGTGCTGTTGATGCTAATGGTAATCGACCCCTTGACTTGATTGTGTCCATGGCTAATTCTATCTTCAATCCAAGGAAGAGGGTGCTACAAGCCTTACTGAAGGGTACAGGTGGTGCTGATCAGGCATGTCTTTCAGTTCCAGAGGTGGTTGACCAAATTGATGAACAAAGACAAGATATGAACACACCTCGTGTTTCGAAAGATGGAACTGAGAAGAAAGATTATCCCATTGATCTCTCCCTTCCGGATATAAAGAATGGAATATATGGTACAGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGACGTGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGTCCTGAGTTTAGGAAAGGATCCTGCAGCAAGGGGGATTCCTGTGAGTATGCACATGGAATTTTTGAGTGTTGGCTTCACCCTGCCCAGTATCGGACACGGCTTTGCAAGGATGAGAGTGCATGCACAAGAAGAGTTTGTTTCTTTGCTCACAAACCTGAAGAGCTTCGCCCCTTGTATGCATCTACCGGTTCTGCTATTCCTTCTCCCAGGTCATATTCTTCTAGCACTTCTGCATTAGAAATGGGTTCAGTTAGCCCAATTGCACTTGGTTCTCCATCTGTGTTGATACCACCAAGCTCAACACCACCTTTGACACCATCTGGAGCATCTTCTCCTGTTGGTGGAGCCATGTGGCAGACTCAGTCTAGCATTTCAGTCCCTACCCTGCAGTTGCCCAAAAGCAGGTTGAAGACTGCATTAGCTGCTAGAGATATTGATTTAGATACTGAATTACTTGGACTCGAAAGACGTAGGCAACAGCTAATGATGGATGAGATATCTTGTCTTTCCTCTCCTTCCAACTGGAAAAATTCCATGCCTAACAGTCCATCTTTTCCTGTTTCTTTGGGTGATCATACTGGTGAACTAAATAGGCTCTCAGGGGTGAAGCCTGCTAACCTTGAAGACATTTTTGGGTCTCTTGATCAATCAATTTTGCCTAATTTCCATGGAATCTCACAGTTACAATCTCCAACTGGAATCCAAATACATCAGAATGTGAACCAGCAGCTTCGAAACTATTCTTCTGGCATTTCCACTTCAAGTGTGATTGGATCACCTACCTTTAGGATTGATCCATCTGGGGAAGCAGCCAAAACAGTGGCTTTGAATCCAAGAGCTGCTGCCTTTGCAAAACGGAGCCAGAGCTTTATTGAGCGCAGCGTGGTGAACCGTCATTCTGAACTTCCTTCTCCCATTGCCTCTGTAGCAGCAAAGCCTTCTACTTTTTCTGGCTGGAGCTCACCTGATGGAAAACTAGATTGGGCCATGAATGGAGAAGATCTGAATAAACTGAGAAAATCTTCTTCTTTTGGATTTCGAAGCAGCAATAGTCCTTTAACTATGGCTACAACAAGAGTGCCAACAAATGTTGATGAACCAGATGTGTCTTGGGTTCATTCACTTGTGAGGGATGCTACTCCTCTGGAATCTGGTCAATTTAGTGTTGAAGATCAGCAAAAAAAACTGCAATGCCACCTTAACAATGGAACAGATGTGATTCCAGCTTGGTTGGAGCAACTGTACATAGAGCAAGAGCAAATGGTGGCATGA 2109 0.4381 MCSGSKRKTSQIGLVMENEYGRIEGLHHKISALLEFSATDDLIGFKDAVEKEGHDVDEVGLWYGRRIGSNKLGYEERTPLMVAAMFGSLGVSTYILGTGRVDVNRPSGSDGATALHCAVAGCSVASPEVVKLLLDSSADVSAVDANGNRPLDLIVSMANSIFNPRKRVLQALLKGTGGADQACLSVPEVVDQIDEQRQDMNTPRVSKDGTEKKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCEYAHGIFECWLHPAQYRTRLCKDESACTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSSSTSALEMGSVSPIALGSPSVLIPPSSTPPLTPSGASSPVGGAMWQTQSSISVPTLQLPKSRLKTALAARDIDLDTELLGLERRRQQLMMDEISCLSSPSNWKNSMPNSPSFPVSLGDHTGELNRLSGVKPANLEDIFGSLDQSILPNFHGISQLQSPTGIQIHQNVNQQLRNYSSGISTSSVIGSPTFRIDPSGEAAKTVALNPRAAAFAKRSQSFIERSVVNRHSELPSPIASVAAKPSTFSGWSSPDGKLDWAMNGEDLNKLRKSSSFGFRSSNSPLTMATTRVPTNVDEPDVSWVHSLVRDATPLESGQFSVEDQQKKLQCHLNNGTDVIPAWLEQLYIEQEQMVA. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01582 702 PANTHER UNKEMPT FAMILY MEMBER 35 657 IPR045234 -
Seca8g01582 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 298 IPR000571 GO:0046872
Seca8g01582 702 Gene3D - 27 114 IPR036770 -
Seca8g01582 702 Gene3D - 115 174 IPR036770 -
Seca8g01582 702 SMART ANK_2a 75 105 IPR002110 GO:0005515
Seca8g01582 702 SMART ANK_2a 110 142 IPR002110 GO:0005515
Seca8g01582 702 Gene3D - 273 336 - -
Seca8g01582 702 Pfam Ankyrin repeats (3 copies) 68 143 IPR002110 GO:0005515
Seca8g01582 702 SMART c3hfinal6 308 331 IPR000571 GO:0046872
Seca8g01582 702 SMART c3hfinal6 273 299 IPR000571 GO:0046872
Seca8g01582 702 MobiDBLite consensus disorder prediction 375 395 - -
Seca8g01582 702 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Seca8g01582 702 FunFam Zinc finger CCCH domain-containing protein 66 231 299 - -
Seca8g01582 702 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Seca8g01582 702 SUPERFAMILY Ankyrin repeat 54 158 IPR036770 -
Seca8g01582 702 ProSiteProfiles Zinc finger C3H1-type profile. 278 300 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01582 Seca-Chr8 29334737 29338039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01582 28 697 C2H2 Transcription Factor Family AT5G12850 39.004 1.34e-141 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g01582 Ank_2 5.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01582 - - aprc:113846970 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01582 8 29334737 29338039 Seca8g01582 8 29334737 29338039 ECH
Seca8g01582 8 29334737 29338039 Seca6g02089 6 80789479 80795563 ECH
Seca8g01582 8 29334737 29338039 Seca6g02722 6 91869327 91874734 ECH
Seca6g02089 6 80789479 80795563 Seca8g01582 8 29334737 29338039 ECH
Seca2g04894 2 135398618 135401521 Seca8g01582 8 29334737 29338039 ECH
Seca8g01582 8 29334737 29338039 Seca6g02722 6 91869327 91874734 PCT