Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01569 ATGGCTGGGGCCTTACTTGGAGTTGTGGTAAACAATTTGACCTCTTTGGTTCAGAATGAATTTGCAACCATTTCTGAAATAAAAAAGAAGGCTGAAAAGCTATCAAGCTCCCTAAATCTGATCAACACCGTTCTTGAAGATGCTGAGGAGAAACAACAAACAAACCGCGCTATAAAGGTTTGGTTACAACAACTCAAAGATACAGTATACGTGCTAGATGATATCCTTGATGAATGTTCAATAGAACATGTTCGACTTGGGGGCTTATCCTCTTTCAAACCAAAGAACATCATGTTTCGTCGTAAGATTGGCAAGAGGATGAAAGAGATTACAAGGAGATTTGATGAAATTGCTGAGAGTAAGAACAAGTTTCTTCTACGAGAGGGTGTTAGGGAAAGGTCAAATGAAGTGGCTGAATGGCGCCAAACCAGCTCAATTATTCCCCAACCTAAAGTATATGGACGACAAGATGATAAAGAGAAGATTGTGAAGTTTCTACTTAGCCAAGCACAGGGCCATGACTTCCTTTCCATCTATCCCATCGTTGGCTTAGGTGGTGTTGGGAAAACTACACTTGCTCAAATGGTTTACAATGATGACCGGGTAAGTACATTTAAACCAAAAATTTGGATATGTGTTTCAGAGAATTTCTCTGTCAAGAGGATTTTGTGTTCCATTATAGAATCTGTCACGGGAGGAAAGTGTGATGCTCAGGATTTGGATGTAATAGCAAGAAAAGTCCAAGAACTGTTGCAAACTAAAAGATATTTGCTTGTTTTAGACGATGTCTGGAAATTAAACCAAAACGAATGGAACAAATTGAAATCTGTGTTGTCATGTGGATCCAAAGGTAGTTCTATTTTAGTATCCACTCGTGATAAGGATGTTGTGACAATCATGGAACCTTGCCAAGCTCATTACTTGGGTGGTCTCTCCGAGGATGACTGTTGGTTGTTGTTCAAACAATATGCATTTGCATCTGATAAAGAAGAGCGTGCAGAGCTTGTGGCAATAGGCAAGGAGATAATAAAGAAGTGTGGGGGGTTGCCTCTTGCAGCACAAGCATTAGGAGGTCTTTTGCGCTCAAGGAGTGAGGAAAAGGAATGGCTTGAAGTTAAGGAAAGTAGGCTTTGGACTTTATCTGATGAAAATTCTATTTTGCCTGCCTTGAGGTTGAGCTACTTTCATTTAATGCCAACCTTGAAACAATGTTTTGCTTTTTGTGCCATATTTTCCAAAGATATGGAAATAGCGAAGGAAGATTTGATTCATCTTTGGATGGCTAATGGGTTTATTTCATCTAGGAAAAACATGGAGGTAGAAGGTGTTGGCAATATGATTTGGAAGGAATTGTACCAAAAATCATTCTTCCAAGATGTCAAGATGGATGATTATACAGGAAACACTTCTTTCAAGATGCATGATCTTGTTCATGATCTTGCTCAATCAGTTATTGGGTCAGAGTGTATGTTTTTGGAGGATGCTAACAAGATTGATTTGTCAAGAAACACACACCATATTGGTTTTCCTTGTCGTCTTTTACCATTCATTAAAAAAGCCTCTGAAGGAGTTGAATCCTTACGAACATTGTATCGACAAAAATGTAGAATTTACGAGGAAGAAAGTTCTGGTTACTTCCCAAGTTCTCTTCGGGTTTTATGTGCAACATCTATAACATCATCATCAGTCAACAATTTAATTCATTTGAGGTATTTGGAGCTTTATAACTTTGACATAAAAACCATCCCTGATTCAATTTATAACCTGCAGAAATTGGAAATCTTGAAACTGGAATCTCTTTCAAATCTTCGTTGTTTACCAGAACGGTTAACTTGCTTACAGAATCTTAGACACCTTGTCATTGAATATTGTAATTCATTGTCTCGAATGTGTCCTAACATTGGAAAATTATCTTGCCTAAGAACATTAAGTGTATACATTGTCAGTTCAAAGATAGGGCACAGTTTGGCAGAATTACATGATCTCAAGTTGGGAGGAAAATTGAGTATCGAAGGCCTAAAAAAGGTTGGCAGTTTATCTGAAGCTCGGGAGGCCAATTTGATAGATAAAAAAGACCTCTGGCTATTATCCTTGTCATGGCAAAATAGTGATGATGAAACTGAGTCACATGCTACCAATCCCGAGCAAGTTATGGAAGGGCTTCAACCTCACTCTAATCTCAAGACGTTGGAAATACATAAATATGAAGGGCTACACTTTCCGAGTTGGATGGGAATTCTCAGCAACTTAGTTAGTCTTTATCTTGTTGATTGCAAGAAATGTGTGCAACTTACATCTCTTGGTAAACTGCCACATCTGAGAAAACTCATAATAATGTTTATGGATAATGTGCAGTACATGGATGATAATGAATCTCATGATGGTGTAGCGGGTAAGACTTTCCCATCTTTGGAGGAGCTCATGTTATCAGCGTTACCGAAGTTAGAGCGATTGTTGAAAGTGGAAAAGGTGGAGATGTTCCCTCGTCTTTTTGATTTGTTCATCGACAATTGCCCTAAACTTGTGTTCCCTTCCCTTCCATCTGTTAGAAAGCTCAAGGTATATGGGTGTAACAAAGAGTTACTAAGGTCAATCTCTAGTTTCCACAGTGGTGAAGAAGAACTCACATGCTTACCGGAGGGAATCTTGAGAAACCTAACTTGTCTTGAGACTCTGGAGATAAATTATTTTCCGAAATTGAAGGAATTACCAAATGAACTCTTTAACCTCGAAATTGGAGGAGTTCTAAAATTGGAGCATCTATTTTTCTCTGATTGTTATGAGCTAGAGTCTTTACCAGAGCAAGGTTGGGAAGGACTATGCTACCTTCGAACTCTGAGCTTTAATGGTTGTACAAGATTGAGATCCTTACCAGATGGTATTCGACGCCTCAATTCAATTGAGCTTCTCAGTATTTATGGATGCCCAACATTAGTGGAGCGGTGTAAGGAGGACGGGAGAGGATTGGGACAAGATAGCGCACATTCGAAACAAAAGTATTTGGAATTAGGAATGAAGCTTATATGCTTCCACCATTGCTCCTCCCTTTGTTTGTCACTCCTTCTCATGTCCACCCCATAA 3081 0.3895 MAGALLGVVVNNLTSLVQNEFATISEIKKKAEKLSSSLNLINTVLEDAEEKQQTNRAIKVWLQQLKDTVYVLDDILDECSIEHVRLGGLSSFKPKNIMFRRKIGKRMKEITRRFDEIAESKNKFLLREGVRERSNEVAEWRQTSSIIPQPKVYGRQDDKEKIVKFLLSQAQGHDFLSIYPIVGLGGVGKTTLAQMVYNDDRVSTFKPKIWICVSENFSVKRILCSIIESVTGGKCDAQDLDVIARKVQELLQTKRYLLVLDDVWKLNQNEWNKLKSVLSCGSKGSSILVSTRDKDVVTIMEPCQAHYLGGLSEDDCWLLFKQYAFASDKEERAELVAIGKEIIKKCGGLPLAAQALGGLLRSRSEEKEWLEVKESRLWTLSDENSILPALRLSYFHLMPTLKQCFAFCAIFSKDMEIAKEDLIHLWMANGFISSRKNMEVEGVGNMIWKELYQKSFFQDVKMDDYTGNTSFKMHDLVHDLAQSVIGSECMFLEDANKIDLSRNTHHIGFPCRLLPFIKKASEGVESLRTLYRQKCRIYEEESSGYFPSSLRVLCATSITSSSVNNLIHLRYLELYNFDIKTIPDSIYNLQKLEILKLESLSNLRCLPERLTCLQNLRHLVIEYCNSLSRMCPNIGKLSCLRTLSVYIVSSKIGHSLAELHDLKLGGKLSIEGLKKVGSLSEAREANLIDKKDLWLLSLSWQNSDDETESHATNPEQVMEGLQPHSNLKTLEIHKYEGLHFPSWMGILSNLVSLYLVDCKKCVQLTSLGKLPHLRKLIIMFMDNVQYMDDNESHDGVAGKTFPSLEELMLSALPKLERLLKVEKVEMFPRLFDLFIDNCPKLVFPSLPSVRKLKVYGCNKELLRSISSFHSGEEELTCLPEGILRNLTCLETLEINYFPKLKELPNELFNLEIGGVLKLEHLFFSDCYELESLPEQGWEGLCYLRTLSFNGCTRLRSLPDGIRRLNSIELLSIYGCPTLVERCKEDGRGLGQDSAHSKQKYLELGMKLICFHHCSSLCLSLLLMSTP. 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01569 1026 SUPERFAMILY L domain-like 472 860 - -
Seca8g01569 1026 PANTHER DISEASE RESISTANCE PROTEIN RP 26 821 IPR044974 GO:0006952
Seca8g01569 1026 FunFam Probable disease resistance protein At1g63360 394 483 - -
Seca8g01569 1026 Gene3D - 393 484 IPR036388 -
Seca8g01569 1026 Gene3D - 310 392 IPR042197 -
Seca8g01569 1026 Pfam NB-ARC domain 156 393 IPR002182 GO:0043531
Seca8g01569 1026 Gene3D Ribonuclease Inhibitor 651 843 IPR032675 -
Seca8g01569 1026 Gene3D Ribonuclease Inhibitor 844 985 IPR032675 -
Seca8g01569 1026 Gene3D - 134 305 IPR027417 -
Seca8g01569 1026 FunFam Probable disease resistance protein At1g61300 134 304 - -
Seca8g01569 1026 SUPERFAMILY RNI-like 801 976 - -
Seca8g01569 1026 Coils Coil 31 51 - -
Seca8g01569 1026 Gene3D - 6 118 - -
Seca8g01569 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 408 IPR027417 -
Seca8g01569 1026 Pfam Rx N-terminal domain 6 96 IPR041118 -
Seca8g01569 1026 PRINTS Disease resistance protein signature 346 360 - -
Seca8g01569 1026 PRINTS Disease resistance protein signature 178 193 - -
Seca8g01569 1026 PRINTS Disease resistance protein signature 587 603 - -
Seca8g01569 1026 PRINTS Disease resistance protein signature 250 264 - -
Seca8g01569 1026 CDD RX-CC_like 9 119 IPR038005 -
Seca8g01569 1026 Gene3D Ribonuclease Inhibitor 493 650 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01569 Seca-Chr8 28914083 28917211 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01569 181 576 WRKY Transcription Factor Family AT5G45050 23.171 6.84e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01569 - - mtr:11405813 1161.75