Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01567 ATGAACTCTGTGCAGCCCCAAACTGATCACAATAGTATGCATTCTCCAATTGATGACAACCTTTCACATATGCTTTGTGATCAACCCCAAACTGACAACAATAATATGCATTCTACAATTAATGGCATCCTTTCACATCTGCTTTCTAATCAACCCCAAATGAACCAGGATTTAGATCTTAATCCTCCAACTGGGGAAGCTTCTCCTGTCAAAGCTGATATTGAACCTGAATTGTGTCCTCAAGCTATTGTGAAATATTACTTGCATGCATTAGAGAACCAACAGACTGATAAAAGAAAATGGAAACTGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGATGTTTAGTTACCCAACTGATAATAGGAAGACAACTTTGTATACATCTCCGCAAAATCAGTTGTTACGCACACTTCGCGGTGCTTGCAAACTATACATTAAGGAAAAGATTCCTGAATGGACTGCTTCTAGCAGACCTTTGAATGTCTTAGACACTGATAAGGAAAGTGTTGATCATGTTGATGATGCAATCAGACCAACTGGGAATAGAAACAACAAACACACCAAGAAGTCAAAGGCAAAGTTCCAGAGGGTATTATTACCCATGCAGGTGCTAAGAACATGCAAAAAGGTGCAGCAGTTGTCTGCCCCTAGTATGGAACCAAAAAATCCTCAAAATGTTCTGTCTTGGTTAATAGATAATGAAATGGTGTTGCCAAGAAATAAGGTCTTTTATTGGGAAAATGGATATAGGAACACTCCTGAGTTCGTGGGGAGGATTACTCGGAATGGGATAAAGTGTAGGTGTTGTCATAAGCTATATGGTCCTGCTGGTTTTGTGAATCATGCAGGAGGAGGTGACAACCGCATGCCTTCAGCGAGTATATTTTTGAAAGATGGAAGGTCATTGTTTGATTGCATGGTACAAGTAATGCATGATCATAGGACAAGGGAAATCATTGAGACACCAGACAATAATCTATTGGAAGTAATTGGTAGTGGATATGAGTTCTTTCCTTGTACTGGTTTCATTTGTGTATATGTTGGCCTGCATGATATTTTGGGAAAGCCAGTTACAGTGAGCAAGAAAAACCTAACCTGGACACTGATTAAGTGGGAAGACCCAGAGAATGGTGAAGTTGGAAGTGCTGAAAATGACTTGCTGGCAGAGACTTACAGCAAACTCAATGTTGCTTTGTTAGTAATGCATGAGTGTTTTGAGCCCCTCAAGAACCCTTTCTCTAATAGGGATCTTGTTGATGATTTTCTATTCAACAGAAGGTCGGAGCTCAATCGACTGAATTTTCAAGGTTTTTATACTATACTTCTGGAGAGAAATGAAGAAATGATTAGTGTGGCAACTCTTAGGGTGTTTGGAGATAAGGTAGCAGAATTACCTCTTGTTGGTACTAGAGATCGGTATCGCCGAAAAGGAATGTGTGGAATCTTAATGGCTGAGCTTGAAAAGCTGGCCGAACTAGGAGTGGAGAGGCTAGTGTTGCCAGCTACTCCTAGTGTTCTGAATTCGTGGAAAAATACTTTTGGCTTCTCAGAAATGACAGATTTTGACAGAGCTCAATTTTTGGACTGTGCTTTCTTAGATTTTCAGGGAACTATAATGTGTCAGAAGCTATTAAAGAGGGTTCCTTCTCCAGATTCATCTTTAATACGAGGTTAG 1680 0.3994 MNSVQPQTDHNSMHSPIDDNLSHMLCDQPQTDNNNMHSTINGILSHLLSNQPQMNQDLDLNPPTGEASPVKADIEPELCPQAIVKYYLHALENQQTDKRKWKLKAKKHLLAEGWMFSYPTDNRKTTLYTSPQNQLLRTLRGACKLYIKEKIPEWTASSRPLNVLDTDKESVDHVDDAIRPTGNRNNKHTKKSKAKFQRVLLPMQVLRTCKKVQQLSAPSMEPKNPQNVLSWLIDNEMVLPRNKVFYWENGYRNTPEFVGRITRNGIKCRCCHKLYGPAGFVNHAGGGDNRMPSASIFLKDGRSLFDCMVQVMHDHRTREIIETPDNNLLEVIGSGYEFFPCTGFICVYVGLHDILGKPVTVSKKNLTWTLIKWEDPENGEVGSAENDLLAETYSKLNVALLVMHECFEPLKNPFSNRDLVDDFLFNRRSELNRLNFQGFYTILLERNEEMISVATLRVFGDKVAELPLVGTRDRYRRKGMCGILMAELEKLAELGVERLVLPATPSVLNSWKNTFGFSEMTDFDRAQFLDCAFLDFQGTIMCQKLLKRVPSPDSSLIRG. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01567 559 Gene3D - 383 551 - -
Seca8g01567 559 Pfam Tify domain binding domain 259 310 IPR032308 -
Seca8g01567 559 MobiDBLite consensus disorder prediction 1 38 - -
Seca8g01567 559 CDD NAT_SF 442 501 - -
Seca8g01567 559 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 432 530 IPR016181 -
Seca8g01567 559 PANTHER PHD FINGER PROTEIN 12 347 550 IPR042163 GO:0003714|GO:0045892
Seca8g01567 559 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 386 546 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01567 Seca-Chr8 28839907 28843687 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01567 347 555 PHD Transcription Factor Family AT5G63900 41.509 1.02e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01567 - - gmx:102661511 312.383