Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01566 ATGGCTGACGCCTTACTTGGATTTGCGTGTGAGAATTTGCTCTCTCTGGTTCAAAATGAATTTGCAACCATTTCTGGTATCAAGGAGAAGGCTGAAAAGTTATCAAGCACCCTGAAGCTGATCAAGGCCGTACTTGAAGATGCTGAGGAGAAACAACTAACAGATCGTGCTGTAAAGGTTTGGCTACAGCAACTCCGAGATGCAGCATACGTGCTAGATGATATCCTTGATGAATGTTCCATAGAATCCCATCGACTTGGGGTATTATCCTCTTTCAAACTAAACAACATCATGTTTCGCCGCGAAATTGGCAAGAGGTTGAAAGAGATTACAAGGAGATTTGATGAAATTGATGAGATGAAGAACAAGCTTCTTCTAACAGAGGGTGCTAGGGAAAGATCAACTGCTGAAAGGCCCCAAACCATATCAATTGCTCCGAAAAATTTAGATGTAATAGCAAGAAGAGTGCAAGAGTTGTTGCAAAGTAAAAGGTATTTGCTGGTTCTAGATGATGTATGGAAAAGAAATGAAGAATTAGAATCCGGGTTAAGTGGAGACAAATGGGACCAGTTGAAACGCGTGTTGTCATGTGGATCTAAAGGTGCTTCTATTTTAGTATCCACTCTGATGAGGATGTTGCAACAATCATGGAAGCTTGCCAAGCTCATTACCTGGGTGGTCTCTCTGAGGATGATTAATCTCAGACATCTTGTCATTGAATACTGTGATTCATTGTCTTGTATGTTCCCTAACATTGGAAAATTATCTTGCCTAAGAACACTAGGTGTATACATTGTCCGTTCTGAGACAGGGCACAGCTTGGCTGAGTTACATGATCTGAAGTTGGGAGGAAAACTGAGCATCCAAGGCCTACAAAATGTTGCAAGTTTAAGTGAAGCTCGAGAGGCCAATTTGATAAATAAAGAAGACCTATGTGAATTAACCTTGTCATGGAAGAATGGTGATGATGAAACTGAGTCAGATGTTACTAATCCCGACGACCAAGTTCTGGAAGGGCTTCAACCTCACTCAAATCTCAAGGCATTGGAAATATGTGGATACAGGCTACACTGTCCGAGTTGGATGGGAAGTCTCGGTAGTTTAGTTAGTCTTTGCCTTAAAGATTGCAAGAACTTCGTGCAGCTTTCAGGTATTAGTAAACTACCATCTCTTAGAAGACTCAGGATATATGATATGGATAATTTGCAATACTTGGATGACAATGAATCTCATAGTGGGGTGGAGGGCACGGCTTTCCCATCTTTGAAGGAGCTCAGGTTAAGCTGCTTACCCAAGTTAGAGCGTTTGTTGAAAGTGGAAAGAGGGGAGATGTTCCCCCGTCTTTCTGATTTCGAAATCGACAATTGTCCTAAACTTGTGTTGCCATGCCTTCCATCTGTGAAAGAACTCCGTGTATTTCGGTGTAACAATGAGTTACTGGAGTCAATCTCTAGTTTCCAAGGTCTTACCTTCCTTTACCTTGGACACTTCCTTGGTGGCATTGTAACTGATGAAAAACGCATTTGCTTCCGTGGGGGGATGTTGAGAAATCTGACTTGTCTTGAGCACCTGCGTATAAGAGATTTTAGGAAATTGAAGGAATTACCAAATGAACTTGTTAACCTCAAAGCTTTGCAAAAGTTGGAGTTGTGGAACTGTCCTGAGTTGGAGTCTTTACCGGAACAAGGTTGGGAAGGTCTACGCTCACTTCAAACTTTGAGCATTAATCACTGTATAGGATTGAGGTCCTTACCGGAACAAGGTTGGGAAGGTCTACGCTCCCTTGTAACTTTGAGCATTGATTACTGTGAAGGATTGAGGTCCTTACCGGAAGGTGTTCGACACCTCACTTCACTTGAGAATATAAATATTAGTGAATGCCCAGCATTACTGATGCGGTGTCGGGAGGGAACAGGGGAGGATTGGGACAAGATAGAGCACATTCCAAACAAACCTAAATCAGTATCTGATCTTCCTTTATTTTCAACTTTGCATTTTTTCAAAATGGCTGAAGGCTTAGTTGGAGTTGTGTTTGAGAATCTGCTCTCTTTGGTTCAGAATGAATTTGCAACCATTTCTGGAATCAAGGGAAAGGCTGAAAAGCTATCAAGCACTTTAGATCTGATAAAAGCTGTTCTTGAAGATGCTGAGGAGAAACAAATAACAAACCGTTCTATAAAGGTTTGGTTACAGCAACTTAAAGATGCAGTATACGTGCTTGATGATATCCTTGATGAATGTTCAGTAGAATCTCTTCGACTTGGTGGTTTATCCTCTTTCAAACCAAAGAACATCATGTTTCGCCGTGAAATTGGCAAGAGGTTGAAAGAGGTTACAAGGAGATTTGATCAAATTGCTGAAAGTAAAAACAAGTTTCTTCTACGAGAGGGTGTTAGGGAAAGGTCAATTGAAGTGGTTGAGTGGCGCCAAACCAGCTCAATTATTCCCCAAACTAAAGTGTATGGACGAAAAGATGATAAAGAGAAGATTGTGGAGTTTCTTCTTTACCAAGCACATTGCTCTAATTTCCTTTCCATCTATTCCATCGTTGGCTTAGGTGGTATTGGAAAAACAACACTTGCTCAAATGGTCTACAATGATGATCGGGTGAGTAGTAATTTTAACACAAAAATTTGGATTTGTGTTTCTGAGAATTTCTCTGTCAAGAGGATTCTGTGTTCCATTATAGAATCTATAACAAGAGAAAAGTATGATGCCTTTAATTTAGATGTAATAGACAGCAAGGTGCAAGAACTGTTGCAAAGTAAAAGATATTTGCTGATTTTGGATGATGTTTGGAAAAGAAATCAAGAAACAGAATTTGGATTAAGCAAAGACAAATGGAGCAAGTTAAAATCTGTGTTGTCATGTGGATCTAAAGGTGCTTCTATTATATTATCCACTCGTGATAAGGATGTTGCAACCATCATGGGAACATGCTCTGCTCATCATTTGTCCGGTCTCTCTGAGGATGATTGCGATGTTTCTTTCAAGATGCACGATCTTGTCCATGATCTTGCTCAGTCAGTTATGGGGCAAGAGTGTGTGATTTTGGAGGGTGAAAACATGACTGATTTGTCAAGAAGCACACACCATGTTGGTTTTGGCTCTGATCCTCTGTTCTCATTCAATAAGGGAGCCTTTGACAAAGTTGAATCCTTGCGAACATTGTATCAATTAGAATTTTGCAACAGTATAATTTCTGATTACTTCCCAACATATTGTTCTCTTCGGGTTTTACGCACAAGTTCTTTCATGTTATCTTCACTCGGGAATTTAATTCATTTGAGTTTAGAGTCAGGGCACAGCTTGGCAGAGTTACATGATCTAAAGTTGGGAGGAAAACTGAGCATCCAGGGCCTTGAAAATGTTGGCAGCTTATCTGAGGCTCAAGAGGCCAATTTGATAGACAAAAAAGACCTACAACAATTGTGCTTGTCATGGGGTGCTAAAACCAAGTCAAGTGTTATTACTAATCCTGAACAAGTACTTAAAGCTCTTCAACCTCACTCAAATTTGAAAACAATGAAAATATATGATTATGAAGGATTACTATTCCCAAGGTGGATGAGCAAGCTAAGCAGTTTAGTTAATCTTACTCTTGATGGTTGCAAAAACTGTGTGCAACTTCCACCACTTGGTAAACTTCCATCTCTGAAAAAACTAGAAATAGCAAATATGAATGATGTGAAGTACATGGATGATGATGAGTCTTATGATGGTGTGGATGTGAGAGCATTCCCATCATTAGAGGAACTCTCATTAGATAGTTTGCTAAACTTGGAGCGGTTGTTGAAAGTGGAAACTGAGGAGATGTTCCTCTGTCTTTCTGATTTGACAGTCATGAAATGTCCTAAGCTTCTGTTGCCATGCCTTCCATCTATTAAAAGCCTCTATGTATATGGATATAGCAATGAGTCACTAAGGTCAATCTCTAGCTTTTACAGTCTTACCTCCCTTTTCCTTTATCAAGGTGAAGAAGACCTGATATCCTTCCCAGAGGGATTGATGAGAAACCTCATGTGTCTTCAAACTCTTGTAATTCATGAGTTCCCAAAATTGAAGGAATTACCAAATGAACTCTTAAACCTCAATGCTTTGGAGCGTTTGGAAATCTATCGTTGTGATGAGCTGGAGTCTTTACCGAAGCAAGGATGGGAAGGTCTATCCTCCCTTCGAACTCTCAAATTTCGTGAATGTGTAGGATTGACATCCTTGCCTGATGGTATTCAACACCTCACATCACTTAAGCGTCTGAAAATTTGGAGATGCCCAACATTACAGGAGCGATGCAAGAAAGGAAGAGGGAAGGATTGGGACAAGATAGCACATGTTCCAGTTAGCGCAAAAACCCTCTGA 4359 0.4028 MADALLGFACENLLSLVQNEFATISGIKEKAEKLSSTLKLIKAVLEDAEEKQLTDRAVKVWLQQLRDAAYVLDDILDECSIESHRLGVLSSFKLNNIMFRREIGKRLKEITRRFDEIDEMKNKLLLTEGARERSTAERPQTISIAPKNLDVIARRVQELLQSKRYLLVLDDVWKRNEELESGLSGDKWDQLKRVLSCGSKGASILVSTLMRMLQQSWKLAKLITWVVSLRMINLRHLVIEYCDSLSCMFPNIGKLSCLRTLGVYIVRSETGHSLAELHDLKLGGKLSIQGLQNVASLSEAREANLINKEDLCELTLSWKNGDDETESDVTNPDDQVLEGLQPHSNLKALEICGYRLHCPSWMGSLGSLVSLCLKDCKNFVQLSGISKLPSLRRLRIYDMDNLQYLDDNESHSGVEGTAFPSLKELRLSCLPKLERLLKVERGEMFPRLSDFEIDNCPKLVLPCLPSVKELRVFRCNNELLESISSFQGLTFLYLGHFLGGIVTDEKRICFRGGMLRNLTCLEHLRIRDFRKLKELPNELVNLKALQKLELWNCPELESLPEQGWEGLRSLQTLSINHCIGLRSLPEQGWEGLRSLVTLSIDYCEGLRSLPEGVRHLTSLENINISECPALLMRCREGTGEDWDKIEHIPNKPKSVSDLPLFSTLHFFKMAEGLVGVVFENLLSLVQNEFATISGIKGKAEKLSSTLDLIKAVLEDAEEKQITNRSIKVWLQQLKDAVYVLDDILDECSVESLRLGGLSSFKPKNIMFRREIGKRLKEVTRRFDQIAESKNKFLLREGVRERSIEVVEWRQTSSIIPQTKVYGRKDDKEKIVEFLLYQAHCSNFLSIYSIVGLGGIGKTTLAQMVYNDDRVSSNFNTKIWICVSENFSVKRILCSIIESITREKYDAFNLDVIDSKVQELLQSKRYLLILDDVWKRNQETEFGLSKDKWSKLKSVLSCGSKGASIILSTRDKDVATIMGTCSAHHLSGLSEDDCDVSFKMHDLVHDLAQSVMGQECVILEGENMTDLSRSTHHVGFGSDPLFSFNKGAFDKVESLRTLYQLEFCNSIISDYFPTYCSLRVLRTSSFMLSSLGNLIHLSLESGHSLAELHDLKLGGKLSIQGLENVGSLSEAQEANLIDKKDLQQLCLSWGAKTKSSVITNPEQVLKALQPHSNLKTMKIYDYEGLLFPRWMSKLSSLVNLTLDGCKNCVQLPPLGKLPSLKKLEIANMNDVKYMDDDESYDGVDVRAFPSLEELSLDSLLNLERLLKVETEEMFLCLSDLTVMKCPKLLLPCLPSIKSLYVYGYSNESLRSISSFYSLTSLFLYQGEEDLISFPEGLMRNLMCLQTLVIHEFPKLKELPNELLNLNALERLEIYRCDELESLPKQGWEGLSSLRTLKFRECVGLTSLPDGIQHLTSLKRLKIWRCPTLQERCKKGRGKDWDKIAHVPVSAKTL. 1453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01566 1452 SUPERFAMILY L domain-like 230 457 - -
Seca8g01566 1452 SUPERFAMILY RNI-like 419 627 - -
Seca8g01566 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 808 1000 IPR027417 -
Seca8g01566 1452 CDD RX-CC_like 670 787 IPR038005 -
Seca8g01566 1452 Pfam Rx N-terminal domain 6 86 IPR041118 -
Seca8g01566 1452 Pfam Rx N-terminal domain 674 765 IPR041118 -
Seca8g01566 1452 Pfam NB-ARC domain 824 993 IPR002182 GO:0043531
Seca8g01566 1452 Pfam NB-ARC domain 140 208 IPR002182 GO:0043531
Seca8g01566 1452 Gene3D Ribonuclease Inhibitor 1025 1288 IPR032675 -
Seca8g01566 1452 PRINTS Disease resistance protein signature 846 861 - -
Seca8g01566 1452 PRINTS Disease resistance protein signature 919 933 - -
Seca8g01566 1452 PRINTS Disease resistance protein signature 1214 1230 - -
Seca8g01566 1452 Gene3D - 116 219 IPR027417 -
Seca8g01566 1452 Gene3D - 804 982 IPR027417 -
Seca8g01566 1452 Gene3D - 673 786 - -
Seca8g01566 1452 Gene3D - 6 115 - -
Seca8g01566 1452 Gene3D Ribonuclease Inhibitor 230 462 IPR032675 -
Seca8g01566 1452 Gene3D Ribonuclease Inhibitor 1289 1434 IPR032675 -
Seca8g01566 1452 Gene3D Ribonuclease Inhibitor 563 658 IPR032675 -
Seca8g01566 1452 Gene3D Ribonuclease Inhibitor 463 562 IPR032675 -
Seca8g01566 1452 CDD RX-CC_like 2 117 IPR038005 -
Seca8g01566 1452 Coils Coil 31 51 - -
Seca8g01566 1452 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 1051 1307 - -
Seca8g01566 1452 Coils Coil 699 719 - -
Seca8g01566 1452 SUPERFAMILY RNI-like 1064 1429 - -
Seca8g01566 1452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 210 IPR027417 -
Seca8g01566 1452 FunFam Probable disease resistance protein At1g61300 803 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01566 Seca-Chr8 28697921 28706288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01566 849 1008 WRKY Transcription Factor Family AT5G45050 27.950 5.51e-06 49.3