Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01563 ATGGGGTCATGGCACCCGGGGAAGGTAATTCGTTGTGGGAGAGAAAAGCGGCATATAAGATATGACAATATTCTTGATATTGATGGAGTAAACTATGTCGTGGAAGCGGTGAGGGTTCCCAATGTTTTGGATGGTGTTAATTCTCCTTCAGTTTCTTGGAGTGAACGTGGGCACATTAGACCAAAACCTCCCGTGATTGAATTTGGAGAAAGGGACCTTTCATTTGGTCTCTGCGTTGATGTGAATTATCAGGATGCTTGGTGGGAAGGTGTTATATTTGATCATTGTGATCAAATGAATGAGAGGAGTGTGTTCTTCCCTGATTTGGGGGATGAAATGAAGGTTGGAATTCAACAACTGAGGATCACTCAGGACTGGGATGAAGTTACTGAGTATTGGAAGACAAGAGGGAAGTGGGTGTTTCTTGAATTATTTGAGGAGTGTGAGCAGGTATCTTATATTGGAGCTTCAGCAAAGCAGATTTGGTATGATGTGAGAGTAAGAGAAGATTTTGAATCCATAAAAGACTGGTATTGCAATGTGAAAGACTTGTGGAGGGACCCTATAGTGAAGGTAGTTGATGACTATTATACCCTCACACTACAAGAAATGTTCCCATCCATAAACCTTCATGAGGATTTATTGATAGGAACACCAGAACTGGAGTTATCTCAACCCATTGATAATAATCACAATGATTCTAGTCATAGTGATGTATCTGGCTCTGATTGTGATATGGATAAGAACTGTGATGCCATAATTCTCATTCCAGAGGAACATGGTACCAATCATTCATTTGACTCTGATTCTGGATCTGAAAAGCCTAAAGAAAATTGTGATAGTATCATTCCAATCCAAGAGGAGTATGATACTGACAACGCTCTTTGTGATACTAATCACAATAATGTATTGGGTTCTGACAATGCAATAAGTGAGATCCCTGAGGAAAAAGATGATACTGATCTAAACTGTGGGAACATCATTCCCAGTGAAGAGCAATATGGTACAAGTCCTATGGTTGAAGGGGAACTTGAGAAGGATATTCCTTTATCTCCACTTCAAGAGGATTTTCCTGAGTCTGAAACAGAAACTACAAGCGATGATGATGATGTTGTTGAAGAAAATTCAGGTTCTAGTATTTCTGTAAAAAGAAATAAACGTAGGCGCTCAACATCCATAGCTTGGAATATTCTGACACTAGATGATGTTGAACCCTTCCCTGAAGTTATTGATGAATATATAGCTGGATGTAGGAGCAAGACGATTAGGGAACAATTGAAGACAAAAGTAAAACAACATCTTACATATCTTGGATGGACAATTGAATGGACTTCAAATAAACATGATCCTCGAGTAAAAAGATACAGGTACAAGTCACCTGATTCAAATGACTAG 1395 0.3907 MGSWHPGKVIRCGREKRHIRYDNILDIDGVNYVVEAVRVPNVLDGVNSPSVSWSERGHIRPKPPVIEFGERDLSFGLCVDVNYQDAWWEGVIFDHCDQMNERSVFFPDLGDEMKVGIQQLRITQDWDEVTEYWKTRGKWVFLELFEECEQVSYIGASAKQIWYDVRVREDFESIKDWYCNVKDLWRDPIVKVVDDYYTLTLQEMFPSINLHEDLLIGTPELELSQPIDNNHNDSSHSDVSGSDCDMDKNCDAIILIPEEHGTNHSFDSDSGSEKPKENCDSIIPIQEEYDTDNALCDTNHNNVLGSDNAISEIPEEKDDTDLNCGNIIPSEEQYGTSPMVEGELEKDIPLSPLQEDFPESETETTSDDDDVVEENSGSSISVKRNKRRRSTSIAWNILTLDDVEPFPEVIDEYIAGCRSKTIREQLKTKVKQHLTYLGWTIEWTSNKHDPRVKRYRYKSPDSND. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01563 464 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 2 305 - -
Seca8g01563 464 Pfam Agenet domain 2 64 IPR008395 -
Seca8g01563 464 SMART agenet_At_2 71 128 IPR014002 -
Seca8g01563 464 MobiDBLite consensus disorder prediction 360 374 - -
Seca8g01563 464 MobiDBLite consensus disorder prediction 352 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01563 Seca-Chr8 28532769 28534163 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01563 1 205 PHD Transcription Factor Family AT5G58610 45.894 1.78e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01563 - - gmx:100806062 398.282