Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01562 ATGAACTTTGTGCAGCCCCAAACTGATCACAATAGTATGCATTCTCCAATTGATGACAACCTTTCACATATGCTTTCTGATCAACCCCAAACTGACAACAATAATATGCATTCTACAATTGATGGCATCCTTTCACGTCTGCTTTCTAATCAACCCCAAATGAACCAGGATTTATATCTTAATCCTCCAACTGGGGAAGCTTCTCCTGTCAAAGCTGATATTGAACCTAAATTGTGTCCTCAAGCTATTGTGAAATATTACTTGCATGCAATAGAGAATCAACAGACTGATAAAAGAAAATGGAAACTGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGATGTTTAGTTACCCAACTGATAATAGAAAGACAACTTTGTATACATCTCTGCAAAATCAGTTGTTAGGCACACTTCGCGGTGCTTGCAGACTATACATTAAGGACAAGATTCCTGAATGGACTGCTTCTAGCAGACCTTTGAATGTCTTAGACACTGATAAGGAAAGTGTTGATCATGTTGACTATGGTGATGATCTATTGCAGTGTGTGTACCAATTGCTTCAGAAAGATCCTGAATTACATGACATAGATGGTTTACCAACAATCAGACCAACTGGGAATAGAAACAACAAACACACCAAGAAGTCAAAGGCAAAGTTCCAGAGGGTATTATTACCCATGCAGGTGCTAAGAACATGCAAAAAGGTGCAGCAGTTGTCTGCCCCTAGTATGGAACCAAAAAATCCTCAAAATGTTCTGTCTTGGTTAATAGATAATGAAATGGTGTTGCCAAGAAATAAGGTCTTTTATTGGGAAAATGGAGATAGGAACACTCCTGAGTTCGTGGGGAGGATTACTTGGAATGGGATAAAGTGTAGGTGTTGTCATAAGCTATATGGTCCTGCTGGTTTTGTGAATCATGCAGGGGGAGGTGACAACCTCATGCCTTCAACGAGTATATTTTTGAAAGATGGAAGGTCATTGTTTGATTGCATGGTACAAGTAATGCATGATCATAGGACAAGGGAAATCATTGAGACACCAGGCAATAATCTATTGGAAGGTGAAAATGACATTGTTTGTACTGTCTGTAACGATGGTGGTGAAGTCCTTTTATGTGACAAATGCCCCTCAGTATTTCATAAGAAATGTCTTAACATGGAGGACATCCCTGATGGTGACTGGTTTTGCCCATCATGTCGTTGCGGGATCTGTGGCCAAATCAAATTTGAAGGGACTAAGCATGCAGATCTGATTACTTGTGTTCAGTGTGAGCATAAATATCACATTGGATGCTTGAAAAGTAGACCTAATGATCAATCAACAAAATTCCTGAAACATTGGTTCTGCGGTAAAGAGTGTGAACGGGTATATGTTGGCCTGCATGATATTTTGGGAAAGCCAGTTACAGTGAGCGAGAAAAACCTAACCTGGACACTAATTAAGTGGGAAGACCCAGAGAATGGTGAAGTTGGAAGTGCTGAAAATGACTTGCTGGCAGAGACTTACAGCAAACTCAATGTTGCTTTGTCAGTAATGCATGAGTGTTTTGAGCCCCTCAAGAACCCTTTCTCTAATAGGGATCTTGTTGATGATTTTCTATTCAACAGGAGGTCGGAGCTCAATCGACTGAATTTTCAAGGTTTTTATACTATACTTCTGGAGAGAAATGAAGAAATGATTAGTGTGGCAACTTTTAGGGTGTTTGGAGAGAAGGTAGCAGAATTACCTCTTGTTGGTACTAGAGATCGGTATCGTCAAAAAGGAATGTGTGGAATCTTAATGGCCGAGCTTGAAAAGAAGCTGGCCGAACTAGGAGTGGAGAGGCTAGTGTTGCCAGCTATTCCTAGTGTTCTGAATTCGTGGAAAAATACTTTTGGCTTCTCAGAAATGACAGATTTTGAGAGAGCACAATTTTTGGACTGTGCTTTCTTAGATTTTCAAGGAACTATAATGTGTCAGAAGCTATTAAAGAGGGTTCCTTCTCCAGATTCATCTTTAATAGGAGAAACAGATCCAAATGAACAAAAAGATGGTTTCTCTGTTAAATGTAGAGTTGAATTTGAAAAGTCTAGCTCAACATCAGAAGTAGACAAAACAAAGGAGATTGACAAAAGTGGAATTGTGGATCTAATGGAGAAGAAGACAGAGAAAGTAAATATATGA 2169 0.3937 MNFVQPQTDHNSMHSPIDDNLSHMLSDQPQTDNNNMHSTIDGILSRLLSNQPQMNQDLYLNPPTGEASPVKADIEPKLCPQAIVKYYLHAIENQQTDKRKWKLKAKKHLLAEGWMFSYPTDNRKTTLYTSLQNQLLGTLRGACRLYIKDKIPEWTASSRPLNVLDTDKESVDHVDYGDDLLQCVYQLLQKDPELHDIDGLPTIRPTGNRNNKHTKKSKAKFQRVLLPMQVLRTCKKVQQLSAPSMEPKNPQNVLSWLIDNEMVLPRNKVFYWENGDRNTPEFVGRITWNGIKCRCCHKLYGPAGFVNHAGGGDNLMPSTSIFLKDGRSLFDCMVQVMHDHRTREIIETPGNNLLEGENDIVCTVCNDGGEVLLCDKCPSVFHKKCLNMEDIPDGDWFCPSCRCGICGQIKFEGTKHADLITCVQCEHKYHIGCLKSRPNDQSTKFLKHWFCGKECERVYVGLHDILGKPVTVSEKNLTWTLIKWEDPENGEVGSAENDLLAETYSKLNVALSVMHECFEPLKNPFSNRDLVDDFLFNRRSELNRLNFQGFYTILLERNEEMISVATFRVFGEKVAELPLVGTRDRYRQKGMCGILMAELEKKLAELGVERLVLPAIPSVLNSWKNTFGFSEMTDFERAQFLDCAFLDFQGTIMCQKLLKRVPSPDSSLIGETDPNEQKDGFSVKCRVEFEKSSSTSEVDKTKEIDKSGIVDLMEKKTEKVNI. 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01562 722 CDD NAT_SF 553 613 - -
Seca8g01562 722 Gene3D - 494 663 - -
Seca8g01562 722 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 497 658 IPR000182 GO:0016747
Seca8g01562 722 Pfam PHD-finger 361 403 IPR019787 -
Seca8g01562 722 PANTHER PHD FINGER PROTEIN 12 53 707 IPR042163 GO:0003714|GO:0045892
Seca8g01562 722 CDD PHD2_CHD_II 361 401 - -
Seca8g01562 722 SMART PHD_3 361 402 IPR001965 -
Seca8g01562 722 SMART PHD_3 403 455 IPR001965 -
Seca8g01562 722 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 512 640 IPR016181 -
Seca8g01562 722 MobiDBLite consensus disorder prediction 198 218 - -
Seca8g01562 722 MobiDBLite consensus disorder prediction 1 38 - -
Seca8g01562 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 458 IPR013083 -
Seca8g01562 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 403 IPR013083 -
Seca8g01562 722 ProSiteProfiles Zinc finger PHD-type profile. 359 404 IPR019787 -
Seca8g01562 722 Pfam Tify domain binding domain 284 335 IPR032308 -
Seca8g01562 722 SUPERFAMILY FYVE/PHD zinc finger 344 402 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01562 Seca-Chr8 28528659 28532708 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01562 229 606 PHD Transcription Factor Family AT5G58610 45.312 1.63e-108 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g01562 TDBD 2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01562 - - gmx:102661511 817.764