Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01559 ATGGCGGTTGATGGTGAGAGGAGTTATAGGGACAGGAAGCGTAAAAGAGGGTCGACGAAGAGAAAGCTTCTTGTCAATGAAAGAGTTGAGGTGAAGAGTTTTGAAGAAGGTTTTATGGGGTCATGGCACCCAGGGATAGTCATTCGTTGTGGGAGAGAAAAGCGGCATATAAGATATGACAATGTTCTTGATGTTGATGGAGTAAACTATGCCGTGGAAGCGGTGAGGGTTCCCAATGTTTTGGATGGTGTGAATTCTCCTTCAGTTTCTTGGAGTGAACGTGGGCACATTAGACCAAAACCTCCTGTGATTGAGTTTGGAGAAAGGGACCTTTCATTTGGTCTCTGTGTTGATGTGAATTATCAGGATGCTTGGTGGGAAGGTGTTATATTTGATCATTGTGATCATATGAATGAGAGGAGTGTGTTCTTCCCTGATTTGGGGGATGAAATGAAGGTTGGAATTCAACAACTGAGGATCACTCAGGACTGGGATGAAGTTACTGAGTATTGGAAGACAAGAGGGAAGTGGGTGTTTCTTGAATTATTTGAGGAGTGTGAGCAGGTATCTTATATTGGAGCTTCAGCAAAGCAAATTTGGTATGATGTGAGAGTAAGAGCAGATTTTGAATCCATAAAAGACTGGTATTGCAATGTGAAAGACTTGTGGAGGGACCCTGTAGTGGAGGTAGTTGGTGACTATTATACCCTCACACTACAAGAAATCTTCCCATCCATAAACCTTCATGAGGATTTGTTGAGAGGAACACCAGAACTGGAGTTATCTCAACCCATTGATAATAATCACAATGATTCTAGTCATAGTGATGTATCTGGCTCTGATTGTAATATGGATAACAACTGTGATACCATAATTCTCATTCCAGAGAAACATGGTACTGATCATTCATTTGACTCTGATTCTGGATTTGAAAATAAAGAAAATTGTGATAGTATCATTCCAATCCAAGAGGAATATGATACTGACAACGCCCTTTGTGATACTAATCACAATAATGTATTGGGTTCTGACATTGCAATAAGTGAGAGCTCTGAGGAAAAAGATGATACTGATCTAAACTGTGGGAACATCATTCCTAGTGAAGAGCAATATGGAACAAGTCCTATGGTTGAAGGGGAAGTTGAGAAGGATATTCTTTTATCTCGACTTCAAGAGGACTTTCCTGAGTCTGAAACAGAAACTACAAGCGATGATGATGATGTTGAAGAAAATTCAGGTTCTAGCAGTTCTGTAAAAAGAAATAAACGTAGGCGCTCAGCGTCCATAACTTGGAATATTCTGACATTGGATGATGTTGAACCCTTCCCTGAAGTTATTGATGAATATATAGCTGGATGTAGGAGCAAGACGATTAGGGAACAGTTGAAGAAAAAAGTAAAACAACATCTTACATATCTTGGATGGACAATTGAATGGACTTCAAATAAACATGATCCTCGAGTAAAAAGATACAGGTACAAGTCACCTGATGCAAATGACCAGAAGCTTTACAATTCAATTTTGAAAGTACTGAAATCTATAAAAAGGCAAGAGAAGTCCAACATGAACTCTGCGCAGCCCCAAACTGATCACAATAGTATGCATTCTCCAATTGATGACAACCTTTCACGTATGCTTTTTGATCAACCCCAAACTGACAACGATAATATGCATTCAACAATTGATTGCATCCTTTCACATCTGCTTTCTAATCAACCCCAAATGAACCAGGATTTAGATGTTAATCCTCCAACTGGGGAAGCTTCTCCTGTCAAAGCTGATATTGAACCTGAATTGTGTCCTCAAGCTGTTGTGAAATATTACTTGCATGCATTAGAGAACCAACAGGCTGATAAAAGAAAATGGAGACTGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGATGTTTAGTTACCCAACTGATAATAGGAAGACAACTTTGTATACATCTCCGCAAAATCAGTGGCTAGGCACACTTCGCGGTGCTTGCAAACTATACATTAAAGAAAAGATTCCTGAATGGACTGCTTCTAGCAGACCTTTGAATGTCTTAGACACTGATAAGGCAAGTATTGATCATGTTGATGATGGTGATGATCTATTTCAGTGTGTGTACCAATTGCTTCAAAAAGAGCCTGAATTACATGACATAGATGGTTTACCAGCAATCAGACCAACTGGGAATAGAAACCATAAACACACCAAGAAGTCAAAGGCAAAGTTCCAAAGTGTATTATTACCTATGCAGGTGCTAAGAACATGCAAAAAGGTGCAGCAGTTGTCTGCCCCTAGTATGGAACCAAAAAATCCTCAAAATGTTCTGTCTTGGTTAATAGATAATGAAATGGTGTTGCCAAGAAATAAGGTCTTTTATTGGGAAAATGGAGATAGGAACACTCCTGAGTTCGTGGGGAGGATTACTCGGAATGGGATAAAGTGTAGGTGTTGTCATAAGCTATATGGTCCTGCTGGTTTTGTGAATCATGCAGGAAGAGGTGACAACCGCATGCCTTCAGCGAGTATATTTTTGAAAGATGGAAGGTCATTGTTTGATTGCATGGTACAAGTAATGCATGATCATAGGACAAGGGAAATCATTGAGACACCAGGCAATAATCTATTGGAAGGTGAAAATGACATTGTTTGTACTGTCTGTAACGATGGTGGTGAAGTCCTTTTATGTGACAAATGCCCCTCAGTATTTCATAAGAAGTGTCTTAACATGGAGGACATCCCTGATGGTGACTGGTTTTGCCCATCATGTCGTTGCGGGATCTGTGGCCAAATCAAATTTGAAGGAAATGAGCATGCAGATCTGATTACTTGTGTTCAGTGTGAGCATAAATATCACATTGGATGCTTGAAAAGTAGACCTAATGATCAATCAACAAAATACCTGAAACATTGGTTCTGCGTTACAGTGAGCGAGAAAAAACTAACCTGGACACTGATTAAGTGGGAAGACCCAGAGAATGGTGAAGTTAGAAGTGCTGAAAATGAATTGCTGGCAGAGACTTACAGCAAACTCAATGTTGCTTTGTCAGTAATGCATGAGTGTTTTGAGCCCCTCAAGAACCCTTTCTCTAATAGGGATCTTGTTGATGATGTTCTATTCAATAGAAGGTCGAAGCTCAATCGACTGAATTTTCAAGGTTTCTATACTATACTTCTGGAGAGAAATGAAGAAATGATTAGTGTGGCAACTCTTAGGGTGTTTGGAGAGAAGGTAGCAGAATTACCTCTTGTTGGTACTAGAGATCGGTATCGCCGAAAAGGAATGTGTGGAATCTTAATGGCTGAGCTTGAAAAGAAGCTGGCTGAACTAGGAGTGGAGAGGCTAGTGTTGCCAGCTATTCCTAGTGTTCTGAATTCGTGGAAAAATACTTTTGGCTTCTCAGAAATGACAGATTTTGAGAGAGCACAATTTTTGGACTGTGTTTTCTTAGATTTTCAGGGAACTATAATGTGTCAGAAGCTATTAAAGAGGGTTCCTTCTCCAGATTCATCTTTAATAGGAGAAACAAATCCAAAAGAGCAATAA 3543 0.3966 MAVDGERSYRDRKRKRGSTKRKLLVNERVEVKSFEEGFMGSWHPGIVIRCGREKRHIRYDNVLDVDGVNYAVEAVRVPNVLDGVNSPSVSWSERGHIRPKPPVIEFGERDLSFGLCVDVNYQDAWWEGVIFDHCDHMNERSVFFPDLGDEMKVGIQQLRITQDWDEVTEYWKTRGKWVFLELFEECEQVSYIGASAKQIWYDVRVRADFESIKDWYCNVKDLWRDPVVEVVGDYYTLTLQEIFPSINLHEDLLRGTPELELSQPIDNNHNDSSHSDVSGSDCNMDNNCDTIILIPEKHGTDHSFDSDSGFENKENCDSIIPIQEEYDTDNALCDTNHNNVLGSDIAISESSEEKDDTDLNCGNIIPSEEQYGTSPMVEGEVEKDILLSRLQEDFPESETETTSDDDDVEENSGSSSSVKRNKRRRSASITWNILTLDDVEPFPEVIDEYIAGCRSKTIREQLKKKVKQHLTYLGWTIEWTSNKHDPRVKRYRYKSPDANDQKLYNSILKVLKSIKRQEKSNMNSAQPQTDHNSMHSPIDDNLSRMLFDQPQTDNDNMHSTIDCILSHLLSNQPQMNQDLDVNPPTGEASPVKADIEPELCPQAVVKYYLHALENQQADKRKWRLKAKKHLLAEGWMFSYPTDNRKTTLYTSPQNQWLGTLRGACKLYIKEKIPEWTASSRPLNVLDTDKASIDHVDDGDDLFQCVYQLLQKEPELHDIDGLPAIRPTGNRNHKHTKKSKAKFQSVLLPMQVLRTCKKVQQLSAPSMEPKNPQNVLSWLIDNEMVLPRNKVFYWENGDRNTPEFVGRITRNGIKCRCCHKLYGPAGFVNHAGRGDNRMPSASIFLKDGRSLFDCMVQVMHDHRTREIIETPGNNLLEGENDIVCTVCNDGGEVLLCDKCPSVFHKKCLNMEDIPDGDWFCPSCRCGICGQIKFEGNEHADLITCVQCEHKYHIGCLKSRPNDQSTKYLKHWFCVTVSEKKLTWTLIKWEDPENGEVRSAENELLAETYSKLNVALSVMHECFEPLKNPFSNRDLVDDVLFNRRSKLNRLNFQGFYTILLERNEEMISVATLRVFGEKVAELPLVGTRDRYRRKGMCGILMAELEKKLAELGVERLVLPAIPSVLNSWKNTFGFSEMTDFERAQFLDCVFLDFQGTIMCQKLLKRVPSPDSSLIGETNPKEQ. 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01559 1180 Pfam PHD-finger 882 924 IPR019787 -
Seca8g01559 1180 CDD NAT_SF 1056 1116 - -
Seca8g01559 1180 Pfam Tify domain binding domain 805 856 IPR032308 -
Seca8g01559 1180 PANTHER PHD FINGER PROTEIN 12 597 1170 IPR042163 GO:0003714|GO:0045892
Seca8g01559 1180 MobiDBLite consensus disorder prediction 348 377 - -
Seca8g01559 1180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 874 924 IPR013083 -
Seca8g01559 1180 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1039 1142 IPR016181 -
Seca8g01559 1180 Gene3D - 994 1166 - -
Seca8g01559 1180 ProSiteProfiles Zinc finger PHD-type profile. 880 925 IPR019787 -
Seca8g01559 1180 SMART agenet_At_2 21 83 IPR014002 -
Seca8g01559 1180 SMART agenet_At_2 109 166 IPR014002 -
Seca8g01559 1180 CDD PHD2_CHD_II 882 922 - -
Seca8g01559 1180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 925 979 IPR013083 -
Seca8g01559 1180 Pfam Agenet domain 27 102 IPR008395 -
Seca8g01559 1180 MobiDBLite consensus disorder prediction 397 411 - -
Seca8g01559 1180 SMART PHD_3 882 923 IPR001965 -
Seca8g01559 1180 SMART PHD_3 924 976 IPR001965 -
Seca8g01559 1180 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1000 1161 IPR000182 GO:0016747
Seca8g01559 1180 SMART ring_2 883 922 IPR001841 -
Seca8g01559 1180 SMART ring_2 924 975 IPR001841 -
Seca8g01559 1180 SUPERFAMILY FYVE/PHD zinc finger 865 923 IPR011011 -
Seca8g01559 1180 MobiDBLite consensus disorder prediction 393 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01559 Seca-Chr8 28147897 28153968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01559 23 261 PHD Transcription Factor Family AT5G58610 43.983 3.10e-57 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g01559 Agenet 5.8e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01559 - - adu:107471457 1113.6