Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01556 ATGGCCACTCAATCGCCACCTCCTCCCTCTCCCACCACCACCGACGAAAACATTCGCAACCAGGATAATGGCATTAACACTGATGCTATTTTTGCCATTAACATTGTATTTGAATTACCAACTGATGTTTTTGCCATTAACACTGATGCTGTGATGGTACAAGATGCCATAAGCGAAAAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGATTTGTTGTGGGTTTCACTGCTGTTTGGCAATTAGCACTGGTTACCCTCGCTGTAGTCCCTATGATAACAGTAATCGGAGCCATTCACACCACCACATTGGCCAAGCTATCTAGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGAAACATTGCAGAACAGACAGAGAGTGAATCAGGTGTGGAGTTAGAAACTGTTACAGGACTAGTGGACCTGAAAAATGTGGACTTTTCATATCCATCAAGGCCAGAGGTTCGGATCCTTAACAGTTTCAACTTGAATGTTCCTGCAGGAAAGACCATAGCTTTAGTGGGACAAGTTTTGCTAGATTGGCATGATGTTAAGACATTGAAGCTTAGGTGGTTGAGATCTTGTTGCTACTTTGGTTCTGCACCTTTCATGTAA 624 0.4263 MATQSPPPPSPTTTDENIRNQDNGINTDAIFAINIVFELPTDVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMITVIGAIHTTTLAKLSSKSQEALSQAGNIAEQTESESGVELETVTGLVDLKNVDFSYPSRPEVRILNSFNLNVPAGKTIALVGQVLLDWHDVKTLKLRWLRSCCYFGSAPFM. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01556 207 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g01556 207 Pfam ABC transporter transmembrane region 46 128 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g01556 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 199 IPR027417 -
Seca8g01556 207 Gene3D - 133 179 IPR027417 -
Seca8g01556 207 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 128 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g01556 207 Gene3D ABC transporter type 1, transmembrane domain 45 128 IPR036640 GO:0005524|GO:0016020
Seca8g01556 207 SUPERFAMILY ABC transporter transmembrane region 46 128 IPR036640 GO:0005524|GO:0016020
Seca8g01556 207 PANTHER ABC TRANSPORTER B FAMILY 45 129 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01556 Seca-Chr8 28111291 28113240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01556 92 206 Calmodulin-binding Proteins AT2G36910 27.273 2.38e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01556 K05658 - pvy:116105382 160.229