Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01552 ATGAGGCCAGCAAGGACGACCACGCACCGCCGTACGCTTAGGGCATCCACAGAGAGGCAGCGAAGAACTGTCAGGAGGGAACCAATTGGATTAGGAGAAGATCAATACCCACATGACCCAGAAGAAGTGCTTGGAGTGCCAGGACGTATTCTGTGGACAACTCTAGTGTCAAGGAGAGATATTAGAGCAAGACAAGGACTGGTTATACCAGTGAGGATTGTAACTGGATTCCTGGTCCGGAACCAAAGAGAAAATCAAATCAAGCTTCCTAATTATCAGCTGCAGTCCTGGGAGCTTATTTGGAACACACAAATACGCAACCACTGCAAGATAGGTGAGGTTTGGAACCAATTTTGCAGGGCTGAGCAACTTGAGGAAGGAGATGAACTCATGTTCTGGTTGTTGGATGGTGAAGATTTTTTAAGACTAGTATTGAGACGCCATAGGGATTAG 453 0.468 MRPARTTTHRRTLRASTERQRRTVRREPIGLGEDQYPHDPEEVLGVPGRILWTTLVSRRDIRARQGLVIPVRIVTGFLVRNQRENQIKLPNYQLQSWELIWNTQIRNHCKIGEVWNQFCRAEQLEEGDELMFWLLDGEDFLRLVLRRHRD. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01552 150 MobiDBLite consensus disorder prediction 1 38 - -
Seca8g01552 150 SUPERFAMILY DNA-binding pseudobarrel domain 51 148 IPR015300 -
Seca8g01552 150 ProSiteProfiles B3 DNA-binding domain profile. 52 149 IPR003340 GO:0003677
Seca8g01552 150 SMART B3_2 51 149 IPR003340 GO:0003677
Seca8g01552 150 MobiDBLite consensus disorder prediction 11 38 - -
Seca8g01552 150 Pfam B3 DNA binding domain 57 147 IPR003340 GO:0003677
Seca8g01552 150 Gene3D - 49 147 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01552 Seca-Chr8 28008663 28010617 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g01552 B3 5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01552 - K00615 vun:114184526 35.039