Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01551 ATGGCGGTTGATGGTGAGAGGAGTTATGGGGACAGGAAGCGTAAAAGAGGGTCGACGAAGAGAAAGCTTCTTGTCAATGAAAGAGTTGAGGTGAAGAGTTTTGAAGAAGGTCTTCTGGGGTCATGGCACCCAGGGAAAGTCATTCGTTGTGGGAGACAGAAGCGACATATAAGATATGACAATGTTCTTGATAATGATGGAGTAAACTATGTTGTGGAAGCGGTGAGGGTTCCCAATGTTTTGGATGGTGTTAGTTCTCCTTCAATTTCTTGGAGAGAACGTGGGCTCATTAGACCAAAACCTTCTGTGATTGAGTTTGGAGAAATGGACCTTTCCTTTGGTCTTTGTGTTGATGTTAATTACCAGGATGCATGGTGGGAAGGTGTTATATTTGATCACTGCAATCAAATGAACGAAAGGAGTGTATTCTTCCCTGATTTGGGGGATGAAATGAAGGTTGGAATTCAACAACTGAGGATCACTCAAGACTGGGATGAAGTTACTGAGGATTGGAAGACAAGAGGGAAGTGGGTGTTTCTTGAATTGTTTGAGGAGTGTGAGCAGATATCCTATGTTGGAGCTTCAGCAAAGCAGATTTGGTATGATGTGAGAGAAAGAGAAGATTTTGAATCCATAAAAGACTGGAGTTGTAATGTGAAAGACTTGTGGAGGGTCCTTGTAGTGGAGGTAGTTGGTGACTATTATACCCTCACACTACAAGAAATCTTCCCATCCATAAACCTTCATGAGGATTTCTTGAGAGGAACACCAAAATTGGAGTTATCTCAACCCATTGATAATAATCGCAATGATGCTAGTCACAGTGATGTATCTTGCTCTGACTGTGGAATCAACAAACACACTAGGAAGACAAAAGCAAAGTTCCAGAGGGTATTATTACCTATGCGGGTGCTAAGAACAAGGAAAAAGGTGCAACAGTTGTCTGCCCCTAGTATGGAACCAAAAATTCCTCAAAATGTTATGTCTTGGTTAATAGATAATGACATGGTGTTGCCAAGAAATAAGGTCTTTTACTGGGCAAATGGAGACAGGAACACTCCTGAGTTCGTGGGGAGGATTACTCGGGATGGGATAAAATGTAGGTGTTGTCATAAGCTATATGGTCCTGCTGGTTTTGTTAATCATGCAGGAGGAGGTGACAACCGCATGCCTTCAGCGAGTATATTTTTGAAAGATGGAAGGTCATTGTTTGATTGCATGGTACAAGTAATGCGTGATCATAGGACAAGGGAAATCAATGAGACACCAGGCAATAATTTGTTGGAAGGTGAAAATGACAACGTTTGTACTGTCTGTAACGATGGTGGTGAAGTCCTTTTATGTGACAAATGCCCTTCAGTATTTCATAAGAAGTGTCTTAACATGGAGGACATCCCTGATGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATCTGTGGCCAAATCAAATTTGAAGGGGCTAAGCATGGAGATCTGATTACTTGTGTTCAGTGTGAGCATAAATATCATGTTGGATGCCTGAAAAGTAGACTTGATGATCAATCAACAAAATACCTGGAACATTGGTTCTGCGGTAAAGAGTGTGAACAGGTATATGCGGGCCTGCATGATATTTTGGGAAAGCCAGTTACAATGGATGAGAAAAACCTAACCTGGACACTGATTAAGTGGGAAGACCCAGAGAATGGTGAAGTTGGAAGTGCTGAAAATGACTTGCTGGCAGAGACTTACAGCAAACTCAGTGTTGCTTTGTCAGTAATGCATGAGTGTTTTGAGCCCCTCAAGAACCCTTTCTCTAACAGGGATCTTGTTAATGATGTTCTGTTCAACAGAAGGTCGGAGCTCAATCGACTAAACTTTCAGGGTTTCTATACTATACTTCTGGAAAGAAATGAAGAAATGATTAGTGTGGCAACTCTTAGGGTGTTTGGAGAGAAGGTAGCAGAATTACCTCTTATTGGTACTAGAGGTCGGTATCGCCGAAAAGGAATGTGTGGAATCTTATTGCATGAGCTTGAAAAGAAGCTGACCGAACTAGGAGTGGAGAGGCTAGTGTTGCCAGCTGTTCCGAGTGTGCTGGATTTGTGGAAAAATACTTTTGGCTTCTCAGAAATGACAGATTTTGAGAGAGCACAATTTTTGGACCGTGCTTTCTTAGATTTTCAGGGAACTATAATGTGTCAAAAACTGTTAAATAGGGTTCCTTCTCCAGATTCAAATTTAACAGGAGAAACAGATCCAAAAGAGCAACAAGATGGTTTCTCTTTTAAATGTAGATTTGAATTTGACAAGTCTAGCTCAGCATCAGAAGTAGACCAAATAGAGGAGATTGAAAAAAGTGGAATGGTGGATCTAATGGAGAAGGAGACAGAGAAAGTAAATATATGA 2391 0.4132 MAVDGERSYGDRKRKRGSTKRKLLVNERVEVKSFEEGLLGSWHPGKVIRCGRQKRHIRYDNVLDNDGVNYVVEAVRVPNVLDGVSSPSISWRERGLIRPKPSVIEFGEMDLSFGLCVDVNYQDAWWEGVIFDHCNQMNERSVFFPDLGDEMKVGIQQLRITQDWDEVTEDWKTRGKWVFLELFEECEQISYVGASAKQIWYDVREREDFESIKDWSCNVKDLWRVLVVEVVGDYYTLTLQEIFPSINLHEDFLRGTPKLELSQPIDNNRNDASHSDVSCSDCGINKHTRKTKAKFQRVLLPMRVLRTRKKVQQLSAPSMEPKIPQNVMSWLIDNDMVLPRNKVFYWANGDRNTPEFVGRITRDGIKCRCCHKLYGPAGFVNHAGGGDNRMPSASIFLKDGRSLFDCMVQVMRDHRTREINETPGNNLLEGENDNVCTVCNDGGEVLLCDKCPSVFHKKCLNMEDIPDGDWFCPSCRCGICGQIKFEGAKHGDLITCVQCEHKYHVGCLKSRLDDQSTKYLEHWFCGKECEQVYAGLHDILGKPVTMDEKNLTWTLIKWEDPENGEVGSAENDLLAETYSKLSVALSVMHECFEPLKNPFSNRDLVNDVLFNRRSELNRLNFQGFYTILLERNEEMISVATLRVFGEKVAELPLIGTRGRYRRKGMCGILLHELEKKLTELGVERLVLPAVPSVLDLWKNTFGFSEMTDFERAQFLDRAFLDFQGTIMCQKLLNRVPSPDSNLTGETDPKEQQDGFSFKCRFEFDKSSSASEVDQIEEIEKSGMVDLMEKETEKVNI. 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01551 796 SUPERFAMILY FYVE/PHD zinc finger 421 476 IPR011011 -
Seca8g01551 796 SMART agenet_At_2 109 166 IPR014002 -
Seca8g01551 796 SMART agenet_At_2 21 83 IPR014002 -
Seca8g01551 796 PANTHER PHD FINGER PROTEIN 12 288 782 IPR042163 GO:0003714|GO:0045892
Seca8g01551 796 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 571 721 IPR000182 GO:0016747
Seca8g01551 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 477 IPR013083 -
Seca8g01551 796 Gene3D - 568 736 - -
Seca8g01551 796 Pfam Agenet domain 27 101 IPR008395 -
Seca8g01551 796 SMART PHD_3 477 529 IPR001965 -
Seca8g01551 796 SMART PHD_3 435 476 IPR001965 -
Seca8g01551 796 Pfam Tify domain binding domain 358 409 IPR032308 -
Seca8g01551 796 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 608 713 IPR016181 -
Seca8g01551 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 532 IPR013083 -
Seca8g01551 796 CDD NAT_SF 627 687 - -
Seca8g01551 796 CDD PHD2_CHD_II 435 475 - -
Seca8g01551 796 Pfam PHD-finger 435 477 IPR019787 -
Seca8g01551 796 ProSiteProfiles Zinc finger PHD-type profile. 433 478 IPR019787 -
Seca8g01551 796 SMART ring_2 436 475 IPR001841 -
Seca8g01551 796 SMART ring_2 477 532 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01551 Seca-Chr8 28000373 28005275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01551 303 680 PHD Transcription Factor Family AT5G58610 45.573 4.10e-110 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g01551 Agenet 3.6e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01551 - - var:108323857 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01551 8 28000373 28005275 Seca8g01551 8 28000373 28005275 ECH
Seca8g01551 8 28000373 28005275 Seca8g01551 8 28000373 28005275 PCT