Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01550 ATGGCGGTTGATGGTGAGAGGAGTTATGGGGACAGGAAGCGTAAAAGAGGGTCGACGAAGAGAAAGATTCTTGTCAATGAAAGAGTTGAGGTGAAGAGTTTTGAAGAAGGTCTTCTGGGGTCATGGCACCCAGGGAAAGTCATTCGTTGTGGGAGACAGAAGCGACATATAAGATATGACAATGTTCTTGATGATGATGGAGTAAACTATGTTGTGGAAGCGGTGAGGGTTCCCAATGTTTTGGATGGTGTTAGTTCTCCTTCAATTTCTTGGAGAGAACGTGGGCTCATTAGACCAAAACCTCCTGTGATTGGGTTTGGAGAAAGGGACCTTTCATTTGGTCTCTGTGTTGATGTGAATTATCAGGATGCTTGGTGGGAAGGTGTTATATTTGATCATTGTGATCAAATGAACGAGAGGAGTGTATTCTTCCCTGATTTGGGGGATGAAATGAAGGTTGGAATTCAACAACTGAGGATCACTCAGGACTGGGATGAAGTTACTGAGGATTGGAAGACAAGAGGGAAGTGGGTGTTTCTTGAATTGTTTGAGGAGTGTGAGAAGATATCCTATGTTGGAGTTTCAGCAAAGCAGATTTGGTATGATGTGAGGGAAAGAGAAGATTTTGAATCCATAAGAGATTGGAGTTTCAATGTGAAAGACTTGTGGAGGGACCTTGTAATGGAGGTAGTTAGTGACTATTATACCCTCACACTACAAGAAATCTTCCCATCCATAAACCTTCATGAGGATTTATTGATAGGAACACAAGAACTGGAGTTATCTCAACCCATTGATAATAATCACAGTGATGCTAGTAACAGTGTTGCGTCTGGCTCTGACCGTGGAATCTCAAGGCCTAATGAAAATAAGGAGTCCTCAAGGTTGTTAGATATGGATCAGAACTATGATACCATAATTCTCATTCCAGAGGAACATGGTATTGATCATGCATTTTACTCTTATTCTGGATCTGAAAAGCCTAATGAAAACTGTGATAGTATCATTCCAATCCAAGAGGAATATGATACTGACAACCACCTTTGTGATGCTAATCACAATACTGTATTGGGTTCTGACATTGTAATAAGTGAGAGCCCTGAGGAAAAAGATGATATTGATCAAAATTGTGGGAACATCATTCCCAATGTAGAGCAATATGGTACAAGTCCTATGGTAGAAGGGGAACCTGAGAAAGACATTCCTTTACCTCCACTTCAAGAGGACTTACCTGAGTCTGAAACAGAAACTACAAGCAATGATGATGATGTTGAAGATAATTCAGGTTCTAGCAGTTCTATAAAAAGCAATAAACGTAGACGCTCAGCGTCCATAACTTGGAATATTCTGACACTGAATGATGTTGAACCCTTCCCTGAAGTTATTGATGAATATATAGTTGGATGTAAGAGCAAGATGATTAGGGAACTATTGAAGACAAAAGTAAAACAACATCTTACATATCTTGGATGGACAATTGAATGGACTTCAAATAAACATGATCATCGAGTAAAAAGATACAGGTACAAGTCACCTGATGCAATGCTTTACAACTCAATTCTGAAAGTACTTAAATCTATAAAAAGGCAAGAGAAGTCCAACATGAACTCTATGCAACCCCAAACTGACAATAGTATGCATTCTCCAATTGATGACAACCTTTCACATTTGCTTTCTGATCAACCCCAAATGAACCAGGATTTAGATGTTAATCCTCCAACTGGGGAAGCTTCTCCTGTCAAAGCTGATATTGAACCTGAATTGTGTCCTCAAGCTGTTGTGAAATATTACTTGCATGCATTAGAGAACCAACGGGCTGATCAAAGAAAATGGAAACTGAAAGCAAAGAAGCATCTGTTAGCAGAAGGGTGGATGTTTAACTACCCAACTGATAATAGGAAGACAACTTTGTATACGTCTCCACAGAATCAGTGGCTAGGCACACTACGTGGTGCTTGCAGACTATACATTAAAGAAAAGATTCCTGAATGGACTGCTTCTGGCAGACCTTTGAATGTCTCAGACACTGATGAGGCAAGTATTGATCATGTTGATGATGGTGATGATCTATTGCAGTGTGTGTACCAATTGCTTCAAAAAGAGCCTGAATTACATGACATAAATGGTTTACCAGCAATCAGGCCAACTGGGAATAGAAACAACAAACACACCAAGAAGTCAAAGGCAAAGTTCCAGAGGGTATTATTACCTATGCGGGTGTTAAGAACAAGAAAAAAGGTGCAACAGTTGTCTGCCTCTAGTATGGAATCCAAAAATCCTCAAAATGTTCTGTCTTGGCTAATAGATAATGACATGGTGTTGCCAAGAAATAAGGTCTTTTACTGGGCAAATGGAGACAAGAATACTCCAGAGTTCGGGGGGAGGATTACCCATGAAGGGATAAAATGTATGTGTTGTCATAAGCTATATGGTCCTGCTGGTTTTGTGAATCATGCAGGAGGAGGTGACAACCGCATGCCTTCAGCGAGTATATTTTTGAAAGATGGAAGGTCATTGTTTGATTGCATGGTACAAGTAATGTGTGATCATAGGACAAGGGAAATCATTGAGACACCAGGCAATAATCTATTGGAAGGTGAAAATGACAACGTTTGTACTGTCTGTAACTATGGTGGTGAACTCCTTTTATGTGACAAATGCCCTTCAGTATTTCATAAGAAGTGTCTTAACATGGAGGACATCCCTGATGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATCTGTGGCCAAATCAAATTTGAAGGAACTGAGCATGGAGATCTGATCACTTGTGTTCAGTGTGAGCATAAATATCACGTTGGATGCCTGAAAAGTAGACCTGATGATCAATCAACAAAATACCTAGAACATTGGTTCTGCGGTAAAGAGTGTGAACATGTATATGCAAGCCTACATGATATTTTGGGAAAGCCAATTACAGTGGGCGAGAAAAACCTAACCTGGACACTAATTAAGTGGGAAGACCCAGAGAATGGTAAAGTTGGAAGTGCTGAAAATGACTTGCTGGCAGAGACTTACAGCAAACTCAGTGTTGCTTTGTCAGTAATGCATGAGTGTTTTGAGCCCCTCAAGAACCCTTTCTCTAATAGGGATCTTGTGGATGATGTTTTGTTCAATAGATGGTCGGAGCTTAATCGACTGAATTTTCAGGGTTTCTATACTATACTTCTAGAGAGAAATGAAGAAATGATTAGTGTGGCAACTCTTAGGGTGTTTGGAGAGAAGGTAGCAGAATTACCTCTTGTTGGTACTAGAGGTCGGTATCGCCGAAATGGAATGTGTGGAATCTTAATGAAGGAGCTTGAAAAGAAGCTGGCCGAACTAGGAGTGGAGAGGCTAGTGTTGCCAGCTGTTCCTAGTGTGCTGGAGTCATGGAAAAATACTTTTGGCTTCTCAAAAATGACAGATTTTGAGAGAGCACAATTTTTGGACTGTGCTTTCTTAGATTTTCAGGGAACTACAATGTGTCAGAAGCTATTAAAGAGGGTTCCTTCTCCAAATTCAACTTTAACAGGAGAAACATATCCAAAAGAGCAACAAGATGGTTTCTCTGTTAAATGTAGAGTTAAATTTGACAAGTCTAGCTCAACATCAGAAGTAAACCAAACAGAGGAGGTTGACAAAAGTGGAATGATTGATCTAATGGAGAAGGAGACAGAGAAAGTAAATATATGA 3699 0.4009 MAVDGERSYGDRKRKRGSTKRKILVNERVEVKSFEEGLLGSWHPGKVIRCGRQKRHIRYDNVLDDDGVNYVVEAVRVPNVLDGVSSPSISWRERGLIRPKPPVIGFGERDLSFGLCVDVNYQDAWWEGVIFDHCDQMNERSVFFPDLGDEMKVGIQQLRITQDWDEVTEDWKTRGKWVFLELFEECEKISYVGVSAKQIWYDVREREDFESIRDWSFNVKDLWRDLVMEVVSDYYTLTLQEIFPSINLHEDLLIGTQELELSQPIDNNHSDASNSVASGSDRGISRPNENKESSRLLDMDQNYDTIILIPEEHGIDHAFYSYSGSEKPNENCDSIIPIQEEYDTDNHLCDANHNTVLGSDIVISESPEEKDDIDQNCGNIIPNVEQYGTSPMVEGEPEKDIPLPPLQEDLPESETETTSNDDDVEDNSGSSSSIKSNKRRRSASITWNILTLNDVEPFPEVIDEYIVGCKSKMIRELLKTKVKQHLTYLGWTIEWTSNKHDHRVKRYRYKSPDAMLYNSILKVLKSIKRQEKSNMNSMQPQTDNSMHSPIDDNLSHLLSDQPQMNQDLDVNPPTGEASPVKADIEPELCPQAVVKYYLHALENQRADQRKWKLKAKKHLLAEGWMFNYPTDNRKTTLYTSPQNQWLGTLRGACRLYIKEKIPEWTASGRPLNVSDTDEASIDHVDDGDDLLQCVYQLLQKEPELHDINGLPAIRPTGNRNNKHTKKSKAKFQRVLLPMRVLRTRKKVQQLSASSMESKNPQNVLSWLIDNDMVLPRNKVFYWANGDKNTPEFGGRITHEGIKCMCCHKLYGPAGFVNHAGGGDNRMPSASIFLKDGRSLFDCMVQVMCDHRTREIIETPGNNLLEGENDNVCTVCNYGGELLLCDKCPSVFHKKCLNMEDIPDGDWFCPSCRCGICGQIKFEGTEHGDLITCVQCEHKYHVGCLKSRPDDQSTKYLEHWFCGKECEHVYASLHDILGKPITVGEKNLTWTLIKWEDPENGKVGSAENDLLAETYSKLSVALSVMHECFEPLKNPFSNRDLVDDVLFNRWSELNRLNFQGFYTILLERNEEMISVATLRVFGEKVAELPLVGTRGRYRRNGMCGILMKELEKKLAELGVERLVLPAVPSVLESWKNTFGFSKMTDFERAQFLDCAFLDFQGTTMCQKLLKRVPSPNSTLTGETYPKEQQDGFSVKCRVKFDKSSSTSEVNQTEEVDKSGMIDLMEKETEKVNI. 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01550 1232 SMART agenet_At_2 109 166 IPR014002 -
Seca8g01550 1232 SMART agenet_At_2 21 83 IPR014002 -
Seca8g01550 1232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 863 913 IPR013083 -
Seca8g01550 1232 MobiDBLite consensus disorder prediction 264 284 - -
Seca8g01550 1232 Gene3D - 1006 1172 - -
Seca8g01550 1232 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1007 1162 IPR000182 GO:0016747
Seca8g01550 1232 Pfam Tify domain binding domain 794 845 IPR032308 -
Seca8g01550 1232 MobiDBLite consensus disorder prediction 1200 1221 - -
Seca8g01550 1232 PANTHER PHD FINGER PROTEIN 12 567 1218 IPR042163 GO:0003714|GO:0045892
Seca8g01550 1232 MobiDBLite consensus disorder prediction 367 437 - -
Seca8g01550 1232 MobiDBLite consensus disorder prediction 708 728 - -
Seca8g01550 1232 ProSiteProfiles Zinc finger PHD-type profile. 869 914 IPR019787 -
Seca8g01550 1232 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1048 1150 IPR016181 -
Seca8g01550 1232 CDD PHD2_CHD_II 871 911 - -
Seca8g01550 1232 Pfam PHD-finger 872 913 IPR019787 -
Seca8g01550 1232 Pfam Agenet domain 27 102 IPR008395 -
Seca8g01550 1232 MobiDBLite consensus disorder prediction 264 293 - -
Seca8g01550 1232 CDD NAT_SF 1063 1123 - -
Seca8g01550 1232 SMART PHD_3 871 912 IPR001965 -
Seca8g01550 1232 SMART PHD_3 913 965 IPR001965 -
Seca8g01550 1232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 914 968 IPR013083 -
Seca8g01550 1232 SUPERFAMILY FYVE/PHD zinc finger 856 912 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01550 Seca-Chr8 27758548 27765243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01550 23 243 PHD Transcription Factor Family AT5G58610 45.740 7.23e-58 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g01550 Agenet 5.9e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01550 - - adu:107471457 1199.88