Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01545 ATGGCTGAGGCTTTACTTGGAGTCGTGTTCGAGAATCTGAGCTCTTTGATTCAGAATGAATTAGCAACCATGTCTGGAATCAAGGAAAAGGCTGAAAAGTTATTAAGCACTTCAGAGCTGATCAAGGCCGTCCTTGAAGATGCTGAGCAGAAACAACTGACAGAAAAACCTGTTAAGCTTTGGCTGCAGAAACTCAAAGATGCTGTGTATGTGTTAGATGATATCCTTGATGAATGCTCCATTGAATCCCATCGACTTGTGGGTCCATCCTCTTTCAAACCAAGCTTAGGTGGTGTTGGAAAGACAACGCTTGCTCAAATGGTCTACAATGATGATCGGGTAAGTAGTACTTTTAACACAAAAATTTGGATTTGTGTTTCAGAGGATTTCTCTGTCAATAGGATTTTGTGTTCTATTATAAGATCTATCTCAGATGAAAAGTGTGATGTCTGGGATTTAGATAAAATAGAAAGAAAAGTGCAGGAATTGTTGCAAAGTAAAAGATACTTGCTTGTTTTTGACGATGTGTGGAAAATGAATCAAGACAAATGGAACAAGTTGAAATCTGTGTTATCATGTGGATCCAAAGGTGCTTCTATTTTGGTACCCACTCGTGACAAAGATGTTGCAACAATCATGGGAACATGTCAAGCTCATCATTTATCTGGTCTCTCTGACGATGAATGTTGGTTGTTATTCAAACAATGTGCATTTGGACCTACCAAAGAAGAGCGTGAAGAGCTTGTAGCTATAGGCAAGGAGATAGTAAAGAAGTGTGGGGGATTGCCTCTTGCTGCACAAGCATTAGGAGGTTTACTGTGCACAAAGAGTGAGGAAAAGGAGTGGCTTGAAGTTAAAGAAAGTAGGCTTTGGATTTTACCACATGAAAATTCTATTTTGCCTGCCTTGAGGTTGAGCTACATTCATTTAATGCCAACCTTAAAACAATGTTTTGCTTTTCGTGCCATATTTCCCAAAGATGAAGTAATCAAGAAGAAAGATCTGATTCACCTTTGGATGGCCAATGGCTTTATTTCATCCCAAGGAAGCTTGGAGGTAGAAGATGTTGGCAATATGATTTGGAATGAATTGCACCAAAAATCATTCTTCCAAGATATCAAGATCAATTATGAAGGAGACATTTGTTTCAATATGCATGATCTTATCCATGATCTTGCTCAGGGGTCAGAGTGTATGGTTTTGAAGAACTCAAATGAAGCTGATTTATCATGTAGCACACACCATATTTATTCTCGCTCTGATCTAGAATCATTCGAAAAGGGAGTCTTTGAGAAAATTGAATCCTTGCGAACATTATATGACTCAAGATTTTGGATGGATCATGACTCATATATTGACACAAGGATTTCTAGTTGCTTTCATTCTCTTCGGGTTTTAAGGACAAATTCTTTCAAATTATTATCATCATTTGCGAATTTAATTCATTTGAGGTATTTGGAACTTTATGATTTTCGTAACATAAAATCCCTCCCTGACTCAATTTATAGCTTGCAGAAATTGGAAGGATTTTATGGTCTTCAGTGTCTATCAGAACACTTGACCTGCTTACAAAATCTTAGACATCTCATCATTGAACGTTGTCGCCAACTGTCTCGTACCTATCCTAACATTAGAAAATTATGTTGCCTAAAAACAATAAATATGTACATTGTCGATTCAAAGACAGGGCACGGCTTGGCAGAGTTACGTGATCTAAATCTAGGTGGAAAGCTGAGCATTCAAGGCCTTGATAATGTTGGCAGTTTATCAGAAGCTAGAGAGGCCAATTTGAGAGGTAAAATGGACCTTCAGGAATTATGCTTGTCATGGAGAAAAAGCAAGTCATGTGTTACTAATCTTGAGCAAGTAATTGAAGAGCTTCAACCTCCCTCAAATCTCAAGTTCATGGAGATATATCGTTACTATGGATTATGTTTCCCAGGTTGGATCAGAAATCTTAACAATTTAATTGATCTTAGACTTATTGATTGCAATAACTGTGTACACATTCCGTCGCTTGGTAAACTACCATTTTTAAGAAAACTTGAAATAAGGAATATGAATGATGTGCAATACATGTATGATGATGGTGAATATTCTCTTGTGTGTTTCTTTAAAATAAATGAGGGGTATTATTGTCTCAAAAAAGTGAAAATAAAAAAGAGCATATTCTCTTTATATATAGTTATAGATTATTATTATCATTATATTAAAACAATTTCTCTCATCATTAATTTCTGA 2241 0.3632 MAEALLGVVFENLSSLIQNELATMSGIKEKAEKLLSTSELIKAVLEDAEQKQLTEKPVKLWLQKLKDAVYVLDDILDECSIESHRLVGPSSFKPSLGGVGKTTLAQMVYNDDRVSSTFNTKIWICVSEDFSVNRILCSIIRSISDEKCDVWDLDKIERKVQELLQSKRYLLVFDDVWKMNQDKWNKLKSVLSCGSKGASILVPTRDKDVATIMGTCQAHHLSGLSDDECWLLFKQCAFGPTKEEREELVAIGKEIVKKCGGLPLAAQALGGLLCTKSEEKEWLEVKESRLWILPHENSILPALRLSYIHLMPTLKQCFAFRAIFPKDEVIKKKDLIHLWMANGFISSQGSLEVEDVGNMIWNELHQKSFFQDIKINYEGDICFNMHDLIHDLAQGSECMVLKNSNEADLSCSTHHIYSRSDLESFEKGVFEKIESLRTLYDSRFWMDHDSYIDTRISSCFHSLRVLRTNSFKLLSSFANLIHLRYLELYDFRNIKSLPDSIYSLQKLEGFYGLQCLSEHLTCLQNLRHLIIERCRQLSRTYPNIRKLCCLKTINMYIVDSKTGHGLAELRDLNLGGKLSIQGLDNVGSLSEAREANLRGKMDLQELCLSWRKSKSCVTNLEQVIEELQPPSNLKFMEIYRYYGLCFPGWIRNLNNLIDLRLIDCNNCVHIPSLGKLPFLRKLEIRNMNDVQYMYDDGEYSLVCFFKINEGYYCLKKVKIKKSIFSLYIVIDYYYHYIKTISLIINF. 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01545 746 Gene3D - 99 218 IPR027417 -
Seca8g01545 746 Gene3D - 223 305 IPR042197 -
Seca8g01545 746 SUPERFAMILY L domain-like 385 688 - -
Seca8g01545 746 Gene3D - 306 398 IPR036388 -
Seca8g01545 746 FunFam Probable disease resistance protein At1g63360 307 394 - -
Seca8g01545 746 PRINTS Disease resistance protein signature 163 177 - -
Seca8g01545 746 PRINTS Disease resistance protein signature 90 105 - -
Seca8g01545 746 PRINTS Disease resistance protein signature 259 273 - -
Seca8g01545 746 PRINTS Disease resistance protein signature 521 537 - -
Seca8g01545 746 Coils Coil 31 51 - -
Seca8g01545 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 319 IPR027417 -
Seca8g01545 746 Pfam NB-ARC domain 97 287 IPR002182 GO:0043531
Seca8g01545 746 Pfam Rx N-terminal domain 6 85 IPR041118 -
Seca8g01545 746 Gene3D Ribonuclease Inhibitor 413 707 IPR032675 -
Seca8g01545 746 Gene3D - 6 98 - -
Seca8g01545 746 PANTHER DISEASE RESISTANCE PROTEIN RP 58 719 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01545 Seca-Chr8 27362798 27365335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01545 96 693 WRKY Transcription Factor Family AT5G45050 24.353 1.44e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01545 - - mtr:11405813 694.886