Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01544 ATGTCTTGCTCCGTCGCAGTTTCGAATTCGCCGGTGTTCTCTCCTTCTTCCTCCCTCTTCTGCTCGAAGCCTTCTATCATTTCTTCTTCCCCTGAAGCTCTAACCCTTTCTCTCTCTCACCTAAAGCCAAATTCTTCTTCTACGGCGTCCTCTTCTTCTTCCCCTTCTGCTTGTTCTTCCCCTTCTTCCCCTTTTCGTCTTCGCCTTCCCAAACCCCCAACAGTTTTCTCCGCTCCTTCCTCTTCTGCCTCCTCTACCTCTCCAAACGGCACCGTTTTGAAGAGGAAGAGACCAGCGAGGCTTGATATACCCGTTAGTTCTCTCACCTTTGGGGTTCCGGCGACGCCGTCGGCGATGGCAAGGGATGACCTTGAGGCTGAGGGAGATGGGTTTTCTGTGTACTGCAAAAGAGGAAGGAGGGAGTACATGGAGGATCGTTACACCGCTGGGGATAATCTACGCGGAGAACACAAACTGGCTTTTTTTGGCATATTTGATGGGCATGGAGGTGCAAAAGCAGCAGAGTTTGCTGCAAATAACTTAGAAAAGAATGTCTTGGATGAGGTGATCATGAGTGATGATGATGATATTGAGGAGGCAGTGAAGCGCGGTTACCTCAACACAGATTCTGATTTCTTGAAAGAGGATCTCCATGGTGGCTCATGCTGTGTAACAGCTTTGATTAAAGATGGTAACCTTGTTGTGTCCAATGCTGGTGATTGCCGTGCTGTCATAAGCAGAGGAGGTGTTGCTGAGGCCCTAACATCTGATCATAGACCTTCAAGGGAAGATGAAAGAGACAGAATTGAGACCCTGGGTGGCTATGTTGATTTATGCCGTGGTGTTTGGAGGATCCAAGGATCACTGGCTGTATCTAGAGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAGCCTGAGACCAAAGTTATCAAAATTGAACCTGAACATGACTTGTTAATATTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGATATTGCTCGTCCTTTATGTGTAGGGAACAACAAACCACAGCCATTGTTGGCATGTAAAAAGCTTGTAGATTTGTCTGTTTCAAGAGGCTCTATGGATGATACAAGTGTTATGCTAATCAAATTGGAGCATTATGTTTGA 1158 0.4629 MSCSVAVSNSPVFSPSSSLFCSKPSIISSSPEALTLSLSHLKPNSSSTASSSSSPSACSSPSSPFRLRLPKPPTVFSAPSSSASSTSPNGTVLKRKRPARLDIPVSSLTFGVPATPSAMARDDLEAEGDGFSVYCKRGRREYMEDRYTAGDNLRGEHKLAFFGIFDGHGGAKAAEFAANNLEKNVLDEVIMSDDDDIEEAVKRGYLNTDSDFLKEDLHGGSCCVTALIKDGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVIKIEPEHDLLILASDGLWDKVSNQEAVDIARPLCVGNNKPQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYV. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01544 385 MobiDBLite consensus disorder prediction 40 63 - -
Seca8g01544 385 Pfam Protein phosphatase 2C 131 373 IPR001932 -
Seca8g01544 385 PANTHER PROTEIN PHOSPHATASE 2C 59 379 IPR015655 GO:0004722|GO:0006470
Seca8g01544 385 Gene3D - 130 384 IPR036457 -
Seca8g01544 385 ProSiteProfiles PPM-type phosphatase domain profile. 130 381 IPR001932 -
Seca8g01544 385 FunFam probable protein phosphatase 2C 25 123 384 - -
Seca8g01544 385 ProSitePatterns PPM-type phosphatase domain signature. 161 169 IPR000222 GO:0043169
Seca8g01544 385 MobiDBLite consensus disorder prediction 40 98 - -
Seca8g01544 385 SMART PP2C_4 120 379 IPR001932 -
Seca8g01544 385 SUPERFAMILY PP2C-like 131 382 IPR036457 -
Seca8g01544 385 CDD PP2Cc 130 381 IPR001932 -
Seca8g01544 385 MobiDBLite consensus disorder prediction 75 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01544 Seca-Chr8 27195132 27197234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01544 1 385 PP2C-type Phosphatase Gene Family AT2G30020 65.664 1.51e-174 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01544 K17506 - gmx:100797934 606.29