Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01543 ATGGCTAATTCGTGGGTGAGAGGCAAGTGTATCGGTAAGGGCGTGTTTGGCGTTGTGAACATAGCGGTTTCGAAACGTGATGGTCGGGTTTTTGCGGTGAAGTCCGTGGATCGGAAAACGGGGCTACCGGGTCAACTTGAGGCGTTGGAGAACGAGATTCGGATCCTCCGTCGCATGTCTTCGCCTCACGTGGTGGCTTATCTCGGCGACGATGTCACTTGTGAAGGGGGTAAAACGTCGTCGTTCCGGAACCTTCATTTGGAGTACATGCCAGGTGGCACCGTCGCTGACGTGGACGCTGCTGACGTGGATGAACGGTTGGTGCGGCGCTACGCGTGGTGCTTGGTGAACGCGCTGCAACATGTTCACGCTAGCGGCGTTGTGCACTGTGACGTGAAGGGGAGGAATGTCCTCGTCGCCGGCGACGGCACGGCGAAGCTCGCTGACTTCGGCGCGGCGGTGGAATTCTCCGTCGGGGACTGTTCGGCACCGCGTGGAAGCCCTATGTGGATGGCGCCGGAGGTGATTCGCCGGGAGTATCAAGGACCGGAATCCGACGTGTGGTCTTTAGGATGCACGGTGATTGAGATGATCACCGGGAAACCGCCGTGGGAGGATCGCGGTATTGACACGCTGAGTCGAATCGGGTATTCCGACGGGTTGCCGGAGTTTCCGAGCGTGTTATCGGAGCTTGGACGCGATTTCGTCGAGAAGTGTCTGAGGAGGGATTTTCGCCGGCGATGGAGCTGTGATCAGCTTCTTCAGCATCCATTTTTACTTCCCGATGAGGTTGTGGAATCGTCACCTCGCTGCGTTTTGGACTGGGTTGACTCGTTGTTCACCGAGTCAGAAAACGAGTACGAAGAAGAAGAAGAAGAAGGGGTAATATTCAACAGTGAAGAAAATCAAAATTCAGTGAAAAATAGGATTGGTAAATTGGCGACAAGTTCGAGGGCAAATTGGGAAACAGAGGGTTGGATGGTGGTGAGGGCAATTACATCCGACGCGGAAACAACAATAGAAAAAGGAACGGGAGCGTGCGATGGTGGGTGTGGGGGCGAAGGAGAAGGGACAAAATGGGAATTTGAGAATGTTGTGAGGGTAGAAGAGGGAAAGAAGGAAGGGACTCGTTTGGAATATTCGGAATCAGGAAGATTCGGAACAACGAGAAATGAGAGGGTAAAACGGGAAATGCGGAAGAGGTTGGTGCTGCGGCGTGAGTGTGATCAGTGCAACCGCAACCGCAAGGACAGCATCATAGCTGGAGGTGGTTATGGTTATGGTTGTGGTTGGTGCTGTCGGCATGAGCATGGGTGTGAAAAGTTTGATAGGAATATTATAGTAATATTCAGCATGTACATCTTGAGCTGTAAAATATTCAAATTATGTAATTTATTCTCATTAATATATTATCATTTTCGATTATTTATGTTGCTTACTTTTTTTACTGCGTGTTATAAAACGGGCTTATTTGTGAAGGGAAAATAA 1488 0.5074 MANSWVRGKCIGKGVFGVVNIAVSKRDGRVFAVKSVDRKTGLPGQLEALENEIRILRRMSSPHVVAYLGDDVTCEGGKTSSFRNLHLEYMPGGTVADVDAADVDERLVRRYAWCLVNALQHVHASGVVHCDVKGRNVLVAGDGTAKLADFGAAVEFSVGDCSAPRGSPMWMAPEVIRREYQGPESDVWSLGCTVIEMITGKPPWEDRGIDTLSRIGYSDGLPEFPSVLSELGRDFVEKCLRRDFRRRWSCDQLLQHPFLLPDEVVESSPRCVLDWVDSLFTESENEYEEEEEEGVIFNSEENQNSVKNRIGKLATSSRANWETEGWMVVRAITSDAETTIEKGTGACDGGCGGEGEGTKWEFENVVRVEEGKKEGTRLEYSESGRFGTTRNERVKREMRKRLVLRRECDQCNRNRKDSIIAGGGYGYGCGWCCRHEHGCEKFDRNIIVIFSMYILSCKIFKLCNLFSLIYYHFRLFMLLTFFTACYKTGLFVKGK. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01543 495 Gene3D Transferase(Phosphotransferase) domain 1 1 331 - -
Seca8g01543 495 FunFam Serine threonine protein kinase putative 3 314 - -
Seca8g01543 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Seca8g01543 495 SUPERFAMILY Protein kinase-like (PK-like) 3 277 IPR011009 -
Seca8g01543 495 CDD STKc_MAPKKK 4 259 - -
Seca8g01543 495 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01543 495 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Seca8g01543 495 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 322 - -
Seca8g01543 495 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01543 495 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01543 Seca-Chr8 27158212 27159699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01543 5 341 MAP Kinase Kinase Kinase AT2G30040 60.174 7.99e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca8g01543 Pkinase 4.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01543 - - tpra:123921217 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01543 8 27158212 27159699 Seca8g01543 8 27158212 27159699 ECH