Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01536 ATGCTGAACCAATCCGATTCACCCAACTCGCCCACCAACCCACTGAGTCAACTCGCTCGGAAAATGTTCTCCGACGACGACGACAACAACAACAGCATCATGCTCGCAGCTATCATTTCCTTGCTCCTTGTCATCCTCTTCGTTCTGCTCCTCCACGTGTACGCCAAGTGGTTCTTATCTCACGCTCACGCACAATCACAGTCACAGCGAGCTCCGGTGACTGTCTCCGGCGTTCCGGGGCCGTCCCAATTCCACCAGATCAACATAGAAACCTCACCCATCTCGTCCAAAGGACTCGACTCGGCGATAGTTTCGGCGATTCCCATGTTTGTGATTGAAGCTGAAGCAGAGGAAGAAACAGAGGAATTGGAATGTGTGATTTGTTTGAGTACTTTTGAGGAAGGAGAGATTGGAAGGTGTTTACCAAAATGTGGCCACGCTTTTCATGTGGGTTGCATTGATATGTGGTTAAGTTCTCATTGCAATTGTCCAATTTGTAGAACTCCTATTGATCAAAATGATTCCCAATTGGGTTCTGTTGATGATGGTGTGGTTGAGATTGTGATTGATACTCCAAGTTATGAGAGTGAGCGTGGGAGAGATTCTTCATCAGAAACATCACTGTCTTTGTTGGGTTGTTCTTTGAAGAGAATGCTGAGCAAGGTTTTTCTGTCTTCCCATGTAAATCAAGTAGATGGTTCAGAATAA 708 0.4605 MLNQSDSPNSPTNPLSQLARKMFSDDDDNNNSIMLAAIISLLLVILFVLLLHVYAKWFLSHAHAQSQSQRAPVTVSGVPGPSQFHQINIETSPISSKGLDSAIVSAIPMFVIEAEAEEETEELECVICLSTFEEGEIGRCLPKCGHAFHVGCIDMWLSSHCNCPICRTPIDQNDSQLGSVDDGVVEIVIDTPSYESERGRDSSSETSLSLLGCSLKRMLSKVFLSSHVNQVDGSE. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01536 235 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Seca8g01536 235 Pfam Ring finger domain 124 167 IPR001841 -
Seca8g01536 235 CDD RING-H2_EL5-like 125 167 - -
Seca8g01536 235 SMART ring_2 125 166 IPR001841 -
Seca8g01536 235 SUPERFAMILY RING/U-box 112 173 - -
Seca8g01536 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 177 - -
Seca8g01536 235 FunFam RING-H2 finger protein ATL1 86 172 - -
Seca8g01536 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 172 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01536 Seca-Chr8 26944058 26944789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01536 30 171 Rapid Response to Elicitors AT3G16720 38.356 1.25e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01536 - - aprc:113874423 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01536 8 26944058 26944789 Seca8g01536 8 26944058 26944789 ECH
Seca8g01536 8 26944058 26944789 Seca8g01536 8 26944058 26944789 PCT