Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01530 ATGCGTGGCTTGAAGGTCCGTGACATCCTCAATTCCTCAGAAACCACTGGTACAAGAAACAAAGCCACTGGGGGTGTCACCAGAATCAGATCATTGATTTCAAAGCCCAAATCCAACAACAACAACAACTCAACCTCAGCAATTGCAAACCTTGTTGTTCCTCTTCATCTCCCTTTTGCTGATACCATTGAACCTTCCATAGAACCTTACCTTAAACCCATTAACCTCGTAGAGGCCTTAGCAGAACTTTATCACAGACTTGAGTGTTGCCCTCAATCCCAGAAAGCATTACTGTGTTTGGAACAGTACTCGCTGCTACGCAGCCTCGGAGACCAGAAGCTTCTCCGAAGATGTCTCAGGACAGCGCGCCAGAACGCTGAGGATGTTCTCTCTAAGGTTGTGTTGTCAGCATGGTTGAGGTTTGACAGGAGGGAGGATGAGCTTGTGGGTGTTTCATCAATGGATTGTGGTGGTGGTGGGTGCATTCTTGAATGTCCAAAGGTGAATTTGGTAAATGGGTTTAGTCCCTGTTCGATTAATGATAGGTGCCACTGCCAGTGTTCCCAAGAGACTATACTGGAAACTAGCACTGAAAGTGTGTGTTTGCCAGATGAGGAAAAGGATGTTTCTTTTTGCGTTGGTAATGAGGAAATCAATTGTGTTAGGTGGAGAATTGCAGCACTATCAGAGCCATTTAAGGCTATGCTATATGGTGGCTTTGCAGAGTCTAAAATGAGGAAGATTGATTTCACCAAGAATGGGATATGCCCAAGGGGTATGAGGGCAGTGGAATTGTACAGCAGGGCTAAAAGATTGAACCTTTTCTGCCCCATGACTGTTTTGGAGCTTCTTTCCTTTGCCAATAGGTTCTGTTGTGAGGAGATGAAGTCTGCTTGTGAGGCTTATTTGGCTTCAAATGTTGGAAATGTTGATGATGCTTTGGTACTTGTTGACTATGGATTGGAAGAGAGAGCCCCCCTTCTTGTTGCTTCCTGCCTACAAGTATTGCTTAGGGAACTACCAAATTCCTTGTATAATTCAAAAGTGATAAGTGTCTTCTGTAGTTCTGAGGCAAAGGAAAGGTTGTCCATGATGGGGTATGATTCTTTCTTACTGTACTATTTCCTGAGCCAGGTGGCTATGGAAGAAAGCATGGTATCTAAAACTACAATTATGTTACTGGAAAGATTAGGGGAGTGTGCTGCTGAAAGATGGCAGAAGGCCCTTGCATTCCATCAATTGGGGTGTGTGCTGCTTGAAAAGAAAGAATATGAAGATGCACAGCATTGTTTTGAGGCTGCAGCTGAAGCAGGCCATGTGTATTCTTTGGCTGGTGTAGCCAGAACCAAGCATAAGCAGGGCCAACCATGTTCAGCCTATAAGTTAATTAGTTCTCTCATATTTGAGCATAAGCCTGCTGGGTGGATGTATCAGGAGCGTGCTCTTTACAATATGGGAAATGAAAAAAGTGTTGACTTGGATGTTGCAACTGAATTGGACCCCTCCCTTTCATTTCCATATAAGTATAGAGCCCTGGCAAAGGTGGAGGAGGAGGAGATAAAGGCTGGGATTTTAGAGCTTGATAGAATTATTGGATTTAAGCTCTCCCCTGATTGCTTAGAATTGAGGGCTTGGTTGTTTATTGCACTTGAGGATTATGATAGTGCCATGAGAGATGTTAGGGCATTGTTAACTTTAGAACCAAATTATTTAACTTCACATGGGCAGATCACAGGGAAATACTTGGTTCATCTCCTTAGCCATGTGGTACACCAAAAGAGTCAAGCTGAATGCTGGATGCAATTATATGAACAATGGTCTTCTGTTGATGATGTTGGTTCTTTGGCTATTATACATCAGATGCTGGACAATGAGCCTGGAAAGAGCTTGCTGGAGTTTCGTCAGTCTCTACTCCTTTTGAGGTTAAACTGTCAAAAGGCTGCAATGCGCAGTTTGAGGATGGCCAGAAACCATTCTAGCTCAATGCAAGAAAAGTTGATTTATGAAGGATGGATTCTATATGATTCTGGCTATCGAGATGAAGCTCTGGCCAGGGCTGATAGGTCCATCGCAATTCAGAGATCATTTGAAGCCTTTTTTCTAAAAGCATATGTGTTAGCAGATACAAATCTGGATCCTGAATCTTCTTCTTTAGTTATCCAACTTCTGGAAGCAGCACTTCAATGTCCTTCAGATGGACTTCGCAAAGGACAAGCACTAAATAACTTAGGGAGTATTTATGTGGATTGTGGTAAGCTTGAACTTGCAAAAGCATGCTACAAGAATGCCCTTGCAATCAGGCACACAAGAGCTCATCAAGGTCTAGCACGTGTTTATCATCAGAAAAATCAAAGAAAAGCTGCATATGATGAGATGACCAAGCTAATTGAGAAGGCAGAAAGCAATGCTTCAGCATATGAGAAACGATCAGAATACTGTGACCGCGAGATGGCAAAGGTTGATCTTGATGTGGCAACCCAACTGGATCCGTTAAGGACATATCCATATAGATACAGGGCAGCAGTGTTGATGGATGAGCAAAAAGAAACTGAAGCTGTAGAAGAGCTCACCAAGGCCATTAATTTCAAGCCTGACCTGCAAATGCTTCATCTGCGAGCAGCGTTTTATGAGTCAATGGGGGACCTCTCCTCTTCTCTTCAAGATTGTGGGGCAGCTTTATGCTTAGACCCTAACCATACAGACACCCTTGATCTGTATCAAAGGGCACAAAAGATGAGCTTTTAA 2745 0.4324 MRGLKVRDILNSSETTGTRNKATGGVTRIRSLISKPKSNNNNNSTSAIANLVVPLHLPFADTIEPSIEPYLKPINLVEALAELYHRLECCPQSQKALLCLEQYSLLRSLGDQKLLRRCLRTARQNAEDVLSKVVLSAWLRFDRREDELVGVSSMDCGGGGCILECPKVNLVNGFSPCSINDRCHCQCSQETILETSTESVCLPDEEKDVSFCVGNEEINCVRWRIAALSEPFKAMLYGGFAESKMRKIDFTKNGICPRGMRAVELYSRAKRLNLFCPMTVLELLSFANRFCCEEMKSACEAYLASNVGNVDDALVLVDYGLEERAPLLVASCLQVLLRELPNSLYNSKVISVFCSSEAKERLSMMGYDSFLLYYFLSQVAMEESMVSKTTIMLLERLGECAAERWQKALAFHQLGCVLLEKKEYEDAQHCFEAAAEAGHVYSLAGVARTKHKQGQPCSAYKLISSLIFEHKPAGWMYQERALYNMGNEKSVDLDVATELDPSLSFPYKYRALAKVEEEEIKAGILELDRIIGFKLSPDCLELRAWLFIALEDYDSAMRDVRALLTLEPNYLTSHGQITGKYLVHLLSHVVHQKSQAECWMQLYEQWSSVDDVGSLAIIHQMLDNEPGKSLLEFRQSLLLLRLNCQKAAMRSLRMARNHSSSMQEKLIYEGWILYDSGYRDEALARADRSIAIQRSFEAFFLKAYVLADTNLDPESSSLVIQLLEAALQCPSDGLRKGQALNNLGSIYVDCGKLELAKACYKNALAIRHTRAHQGLARVYHQKNQRKAAYDEMTKLIEKAESNASAYEKRSEYCDREMAKVDLDVATQLDPLRTYPYRYRAAVLMDEQKETEAVEELTKAINFKPDLQMLHLRAAFYESMGDLSSSLQDCGAALCLDPNHTDTLDLYQRAQKMSF. 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01530 914 Gene3D Potassium Channel Kv1.1; Chain A 197 345 IPR011333 -
Seca8g01530 914 SMART tpr_5 408 441 IPR019734 GO:0005515
Seca8g01530 914 SMART tpr_5 537 570 IPR019734 GO:0005515
Seca8g01530 914 SMART tpr_5 833 866 IPR019734 GO:0005515
Seca8g01530 914 SMART tpr_5 867 899 IPR019734 GO:0005515
Seca8g01530 914 SMART tpr_5 737 770 IPR019734 GO:0005515
Seca8g01530 914 PANTHER ETO1-RELATED 5 912 IPR044631 GO:0010105
Seca8g01530 914 SUPERFAMILY POZ domain 200 305 IPR011333 -
Seca8g01530 914 Pfam BTB/POZ domain 207 305 IPR000210 GO:0005515
Seca8g01530 914 SUPERFAMILY TPR-like 408 867 IPR011990 GO:0005515
Seca8g01530 914 Gene3D Tetratricopeptide repeat domain 633 801 IPR011990 GO:0005515
Seca8g01530 914 Coils Coil 782 809 - -
Seca8g01530 914 Gene3D Tetratricopeptide repeat domain 812 913 IPR011990 GO:0005515
Seca8g01530 914 SUPERFAMILY TPR-like 492 807 IPR011990 GO:0005515
Seca8g01530 914 Pfam Tetratricopeptide repeat 738 766 IPR019734 GO:0005515
Seca8g01530 914 Pfam Tetratricopeptide repeat 410 436 IPR019734 GO:0005515
Seca8g01530 914 SMART BTB_4 207 307 IPR000210 GO:0005515
Seca8g01530 914 Gene3D Tetratricopeptide repeat domain 393 575 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01530 Seca-Chr8 26769193 26775225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01530 738 898 Glycosyltransferase AT3G04240 26.901 6.04e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca8g01530 BTB 8.9e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01530 - - gmx:100800568 1523.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01530 8 26769193 26775225 Seca8g01530 8 26769193 26775225 ECH
Seca8g01530 8 26769193 26775225 Seca6g02622 6 89955984 89960114 PCT