Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01521 ATGGCCGCAGCTTTGGAGTGTTGGTCTAGCCGCACCACCACCAACAACACCGATGATGACACGGTGGAACAAGTCCTTATGAGGACCCACCACAGATCCGAGTCTCTTCCTTCTTCCTCTTCATCTTCTTCCACTACCAAAGACTCACCTACCTCCGTCCACAAGAAGTTGCAGAAGCTGAGTCGCAACCTCTCTGATGCCATTTCCTCTTTCAAAAACTCTCTTAACCTTAACCTCAACCCCAATGATCATCCCCCTTCTTCTTCTTCTTCTCCTTCTTCTTCCAAGAAACTTGCTTGGGCCACCGTTCTCCGTAACCTCACTCATCTCTACCCTGGAACCCAGCTCCCTGATAACCTCATCTCCAACATTCGCAACCATTACCATTCCCTCCCTCTCAGGTATACATTTTTGTTTGTTTACAGTTATGCACAGGCTGAATTTGATATGAAGGACGTGTTTCTTCACATCAAGTTGATGGAGCAGGCATTGGAGAGTGACCAGCCTGCGATTTTGATTCAGGAAGAGTCTGATGATGATGGTGAGGTTCATCAGGGGTCTGCGTTGAAGCTCACTTTTGCTTGCAACTCTCAGATTTCATGGCCTGCAATGTCTGGTGCTTTGGACAGTTTTTCCATTTGCTGCAAGAGGTTGCAGATCTTTGAGAAGAAAGGTTTTACCTTGGGGGTTGTTCTTCTTGTTGTTCGTTCTGGGCATGATAAATTGGTCAGGACCCGGGTTGAAAATGCTTTGAAATTTGCTACGAAGAAGCCTAAAACTGGTGCTGTGAATGTGAAGCTTCCCTTTGGGCTTTGTGGGTGTCAGGAAGAGAATTACAAGGGGAGAGAACTTGGGGAGATTAGAGAAGACAGTGGTGGTGGTGGTGGTGGAAAAGAGTTTGAGAATTCAAGCCAAAAGATTCAGCTTCAGGTGCCTCTGCCTACTTCATCTTTCATTGTATCAGTGGATGAATGGCAGACTATAAAATCAGGTGGGGATGAGATTGAGAAATGGTTGTTGAACTCAGATAGTGTTGAGTTTACTGAACAGATTGGACCCAATTCTTATAAGGGGGTCTACATGGGGAAAAGGGTTGGAATTGAGAAGCTGAAAGGGTGTGAGAAAGGAAATTCTTATGAGTTTGAGCTTCACAAAGATCTGCTGGAACTGATGACTTGTGGGCACAGAAACATTCTGCAATTCTATGGTATCTGTGTGGATGATAATCATGGGTTGTGTGTGGTGACTAAGTTCATGGAAGGTGGATCTGTTCATGACTTGATGTTGAAGAACAAGAAGCTTCAGACTAAGGATGTTGTAAGAATTGCAATTGATGTAGCTGAGGGGCTTAAGTTTATGAATGACCATGGTGTTGCATACAGAGATCTTAATACACAGAGGATTCTATTGGATAGGCATGGGAATGCTTGCTTGGGAGATATGGGTATAGTCACTGCCTGCAAGAATGTTGGTGAAGCAATGGAGTATGAAACTGATGGTTATAGGTGGCTAGCTCCAGAGATAATTGCAGGGGACCCAGAGAGTGTCACAGAGACATGGATGAGCAATGTTTATAGTTTTGGGATGGTAATTTGGGAGATGGTAACTGGTGAAGCAGCTTATTCTGCATTTTCACCTGTACAAGCAGCAGTGGGCATTGCTGCTTGTGGCCTTAGACCTGAAATCCCCAAGGATTGCCAACAAAATCTAAAATATATTATGACAAAGTGCTGGAACAACACCCCTTCCAAACGTCCTCAATTCTATGAAATTTTAGCCATATTGCTGCGACCAATCAACAACAATAGGTAA 1812 0.4432 MAAALECWSSRTTTNNTDDDTVEQVLMRTHHRSESLPSSSSSSSTTKDSPTSVHKKLQKLSRNLSDAISSFKNSLNLNLNPNDHPPSSSSSPSSSKKLAWATVLRNLTHLYPGTQLPDNLISNIRNHYHSLPLRYTFLFVYSYAQAEFDMKDVFLHIKLMEQALESDQPAILIQEESDDDGEVHQGSALKLTFACNSQISWPAMSGALDSFSICCKRLQIFEKKGFTLGVVLLVVRSGHDKLVRTRVENALKFATKKPKTGAVNVKLPFGLCGCQEENYKGRELGEIREDSGGGGGGKEFENSSQKIQLQVPLPTSSFIVSVDEWQTIKSGGDEIEKWLLNSDSVEFTEQIGPNSYKGVYMGKRVGIEKLKGCEKGNSYEFELHKDLLELMTCGHRNILQFYGICVDDNHGLCVVTKFMEGGSVHDLMLKNKKLQTKDVVRIAIDVAEGLKFMNDHGVAYRDLNTQRILLDRHGNACLGDMGIVTACKNVGEAMEYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMVIWEMVTGEAAYSAFSPVQAAVGIAACGLRPEIPKDCQQNLKYIMTKCWNNTPSKRPQFYEILAILLRPINNNR. 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01521 603 ProSiteProfiles Protein kinase domain profile. 345 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g01521 603 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 54 595 - -
Seca8g01521 603 MobiDBLite consensus disorder prediction 1 58 - -
Seca8g01521 603 MobiDBLite consensus disorder prediction 7 22 - -
Seca8g01521 603 MobiDBLite consensus disorder prediction 76 95 - -
Seca8g01521 603 SUPERFAMILY Protein kinase-like (PK-like) 326 595 IPR011009 -
Seca8g01521 603 Pfam Protein tyrosine and serine/threonine kinase 380 594 IPR001245 GO:0004672|GO:0006468
Seca8g01521 603 Gene3D Transferase(Phosphotransferase) domain 1 338 600 - -
Seca8g01521 603 MobiDBLite consensus disorder prediction 31 51 - -
Seca8g01521 603 PRINTS Tyrosine kinase catalytic domain signature 522 544 IPR001245 GO:0004672|GO:0006468
Seca8g01521 603 PRINTS Tyrosine kinase catalytic domain signature 452 470 IPR001245 GO:0004672|GO:0006468
Seca8g01521 603 PRINTS Tyrosine kinase catalytic domain signature 566 588 IPR001245 GO:0004672|GO:0006468
Seca8g01521 603 PRINTS Tyrosine kinase catalytic domain signature 416 429 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01521 Seca-Chr8 26441952 26446277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01521 328 595 MAP Kinase Kinase Kinase AT2G17700 33.455 7.61e-52 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Seca8g01521 PK_Tyr_Ser-Thr 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01521 - - pvu:PHAVU_008G258400g 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01521 8 26441952 26446277 Seca8g01521 8 26441952 26446277 ECH
Seca8g01521 8 26441952 26446277 Seca6g02614 6 89831938 89836405 PCT