Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01498 ATGGCCACAGACGCGAGGGCCAAATTCCAGAACCCGGATTTCCGACCCGATTTCCATCCGGACTTAACGGTGTCAACTCACGACGGCCTCCACTTCTGGCAGTTCATGATCGCCGGATCTATCGCCGGTTGCATTGAACACATGGCAATGTTCCCCGTTGACACCGTTAAGACCCACATGCAAGCCCTCGGTTCTTGCCCTATCAAATCCGTTACGGTCCGTCAAGCCTTCCGTTCCATTCTTCAATCGGAGGGTCCCTCCGCTTTCTACCGCGGCATCGGAGCCATGGGTCTCGGTGCTGGACCTGCTCACGCCGTTTATTTCTCCGTCTATGAGACCTGCAAGAAGCGATTCTCAGATGGGAACCCGAATAACGCCGTTGCTCACGCCGCTTCTGGCGTCTGCGCAACCGTCGCGAGCGACGCCGTTTTCACGCCGATGGATATGGTTAAGCAGAGGCTGCAGCTGAGTAACAGCGGGTATAAGGGTGTATGGGATTGTGTGAGGAGAGTTATGAGTGAGGAAGGGTTTGGAGCGTTCTACGCGTCGTATAGGACAACGGTTTTGATGAATGCGCCGTTCACGGCGGTGCATTTCGCCACCTATGAGGCGGCGAAGCGGGGACTCATGGAGGTGTCGCCGGATAGCGTTGACGATGAACGGTTGGTTGTTCATGCCACGGCTGGAGCTGTTGCTGGTGCTTTGGCTGCTGTGGTTACAACTCCACTTGATGTGGTTAAAACTCAATTGCAGTGTCAGGTAGGCGTCTGTGGATGTGATAGGTTCAAAAGCGGTTCAATTGGGGATGTTGTTAAAACAATAGTAAAAAAGGATGGATACAGAGGGCTCATGCGAGGATGGATTCCAAGGATGCTCTTTCATGCTCCTGCAGCTGCTATTTGTTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAAAGATACTGGCACTGTCACCTAA 978 0.5256 MATDARAKFQNPDFRPDFHPDLTVSTHDGLHFWQFMIAGSIAGCIEHMAMFPVDTVKTHMQALGSCPIKSVTVRQAFRSILQSEGPSAFYRGIGAMGLGAGPAHAVYFSVYETCKKRFSDGNPNNAVAHAASGVCATVASDAVFTPMDMVKQRLQLSNSGYKGVWDCVRRVMSEEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPDSVDDERLVVHATAGAVAGALAAVVTTPLDVVKTQLQCQVGVCGCDRFKSGSIGDVVKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDTGTVT. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01498 325 FunFam Mitochondrial RNA-splicing protein MRS3 11 158 - -
Seca8g01498 325 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Seca8g01498 325 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Seca8g01498 325 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Seca8g01498 325 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Seca8g01498 325 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Seca8g01498 325 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Seca8g01498 325 Pfam Mitochondrial carrier protein 221 314 IPR018108 -
Seca8g01498 325 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Seca8g01498 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 311 IPR018108 -
Seca8g01498 325 FunFam Mitochondrial RNA-splicing protein MRS3 159 323 - -
Seca8g01498 325 SUPERFAMILY Mitochondrial carrier 28 306 IPR023395 -
Seca8g01498 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Seca8g01498 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
Seca8g01498 325 PANTHER MITOFERRIN-1-RELATED 27 315 - -
Seca8g01498 325 Gene3D Mitochondrial carrier domain 125 325 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01498 Seca-Chr8 25936622 25940250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01498 1 321 Chloroplast and Mitochondria Gene Families AT1G07030 74.772 9.39e-174 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01498 K15113 - gmx:100802640 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01498 8 25936622 25940250 Seca8g01498 8 25936622 25940250 ECH