Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01494 ATGTATCTGAGGAATACCTTAGCTTCTTACCGAACAACTTCTAATGCTGCAACACACATACAAGCTGAATTTAGAGAACACACACTGAAGGAGATAAAGGAATTTCAGTTTTCCAATCCAGAGGCTGAAGCACGCAAGATTGTTGCAGCCATGAAGATTCAACATGCCTTTCGTAATTATAAGACAAGGAAGATGACTGAAGCTGCTACTCGCATCCAGCGTAACTTCCGCAAATGGAAGATCTCTAAAGAATCTACCTACACGCGTCAGCAGGCTATTAAAATTCAAGCTGCTTTTCGAGGTTTCCAGGTGCGGAAACAATACTCTCAAATTCTTTGGTCTATGGGAGTCATTGATAAAACGATCCTGCGCTGCCGTTTTAAGAGAAGAGGCTTTCGTGCGCTCTATGTTAACCCTGTGCAAGAAATGGAAGGTAAGAGGCAGGAAAATAAAGTAGAGGATAAAAAGCAAGCCAAAGAACTTGCTATAAAATTTGTAGTGCATGTTCAGGCCATGTTACGTTCTAAAAAGGCATAG 537 0.4134 MYLRNTLASYRTTSNAATHIQAEFREHTLKEIKEFQFSNPEAEARKIVAAMKIQHAFRNYKTRKMTEAATRIQRNFRKWKISKESTYTRQQAIKIQAAFRGFQVRKQYSQILWSMGVIDKTILRCRFKRRGFRALYVNPVQEMEGKRQENKVEDKKQAKELAIKFVVHVQAMLRSKKA. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01494 178 Pfam IQ calmodulin-binding motif 66 81 IPR000048 GO:0005515
Seca8g01494 178 Pfam IQ calmodulin-binding motif 91 108 IPR000048 GO:0005515
Seca8g01494 178 Pfam IQ calmodulin-binding motif 49 64 IPR000048 GO:0005515
Seca8g01494 178 SMART iq_5 87 109 IPR000048 GO:0005515
Seca8g01494 178 SMART iq_5 45 67 IPR000048 GO:0005515
Seca8g01494 178 Gene3D - 12 65 - -
Seca8g01494 178 ProSiteProfiles IQ motif profile. 88 116 IPR000048 GO:0005515
Seca8g01494 178 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 3 178 - -
Seca8g01494 178 Gene3D - 66 112 - -
Seca8g01494 178 ProSiteProfiles IQ motif profile. 49 75 IPR000048 GO:0005515
Seca8g01494 178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 115 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01494 Seca-Chr8 25745159 25746334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01494 3 178 CAMTA Transcription Factor Family AT3G16940 52.514 4.88e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01494 K21596 - csin:114277705 204.527