Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01491 ATGAACTCAGAAAAGCTAATTACTATGGCGGATGCAGATGCTGCAACTGAAGCTCCTTCTTCGCGCTCTTCCACCACCCTGAGGGAAAATGACGTCTTCATCAGCTTCAGAGGTGAGGATACTCGCAGCAACTTCACAAGCCATCTTCATGCCGCCTTGTGCCGGAACAAAATCAAAACCTACATAGACTACGCGCTTGAAAAAGGTGACCAGATCTCAGAAGCTCTCATGAAGGCAATAGGAGATTCATATGTGTCGGTGGTTGTGTTCTCAGCAAACTATGCAACTTCCACGTGGTGCTTAGACGAGCTCACCTACATAATGAAGTGCAAAATCCGGGACCAGATTGTTGTACCCGTGTTCTACAACGTAGATCCGTCACATGTTCGGAAGCAAACTGGTAGCTATGGGAATGCTTTTGAGAAGCATGTTCGTGATCTCAAACACATGATGAAGGTCAATGAGTGGCGAAATGCTTTGACTGAAGCTGCTAGTTTGGCTGGATGGGACTCTCGTAAATATATGCTCGAATCTGAACTCGTTGATGACATTGTCCAAGATGTTTTGCGAAAACTGCAATATAAATATCCAAGCAAATGGAAGGGCCTTTTTGGAATTAACAAGAATTATGCACGTATTGAATCATTGCTGAGAATAGAATCAAGAGAAGTTCGAATGATTGGAATTTGGGGAATGGGAGGCATTGGAAAGACAACCATTGCTGCAGTTATATTTTCCAATTGCTCTTCTCAATTTGAAGGATTTTGTTTCCTGGAAAATGTTGGAGATGAATCAGATAAGCATGGATTGAATCATGTACATAATAAGCTTCTATCTGTGCTACTGGAAGAAGCAAATGTCCATGTTGGCACAGTCAGAGCCGGTTCCAATTTTTGTAAGAGTAGGCTTAGTCATAAAAGAGTTCTCATTGTGCTTGATGATCTAAGAACTCCAGAGCAACTAGATTATCTAGTTGGAGAACATACTTGCTTGGGACCAGGGAGTAGAGTCATTGTTACAACTAGAGATAAGCATGTTCTTAGTAGAGCTGATGAAATATATGAGGTGAAGCCATTAAACTTTCATGAATCTCTTCAGCTGTTCTGTTCAAATGCATTCAACAATGTCCACCCAGATGTTGGTTATGAGCAGCTATCAGAAAGAGTGGTTAAATATGCAGATGGCATTCCATTAGCTTTGAAAGTTCTAGGCAAATTATTTCATTTCAAAAGTAAAGAAACATGGGAAAGTACAATGACAAAGCTCAAGAAAATCCCCCATAAAGAAATTCAGAAGATATTAAGACTGAGTTATGATGGCTTAGATGATAAAGAGAAGGAAATATTTCTGGACATTGCCTGCTTTTTGAAAGGAGAGGAAAGACAGAATGTGAGAAGACTACTAGATGCATGTGGCTTCTATGCAGGTGCTGGTGTAGAAACCCTTTTGGAAAAGTCCCTAATTACTATTTCAAACAACAATGAAATACAAATGCATTCATTAATACAAGAAATGGGTTGGGAAATTGTTCGTCAAGAATCTACTAAAGACCCTGGGAGACGTAGTCGATTGTGTGATCATGAGGAAGTCTGCAATGTATTGAAAAATAACAGGGGGACTGATGCAATTGAAGGTATATGCATAGATGTATCACAAATTAGAGGTATGAACTTGAGGTCTGACATTTTTGCAAAGATGATTAACCTAAGATTTCTCAAGTTCTACTCTCGTTTGGGAGAGAAATGTAATATTTCCTTTCCTGCTGGCCTTGAGTCTTTGTCTAATGAATTACGGTACCTCCATTGGAGTGGATGTCCTGTGGAGTCTCTACCATCAACCTTTTGTCCTGAGAAACTTGATCTTATTAATTTACAGAAAATGGACCTCAGCTGTTCTCAACACTTGATTGAGCTTCCAGATTTCTCCATGGCAATAAATCTTCAAAGCATTAACCTCTTTGGATGTGTAAGTCTAAGCCATGTTCACCCATCTATTTTATCTCTCAAAAAGCTTGTCAACTTAAACATGGTTTGGTGCAAAAAATTAAAGAGTCTTTTAAGCAATGCCCCTTTAAGATCTCTCAGAATTCTTGAGCTATATGGCTGCTCAAGTCTTGAGGAGTTTTCAGTGACATCTGAAGAAATGACATATTTGGATTTAAGAAATACTGCTATTAATGAGTTGCCAGCATCAATTAAGCACCTTGGTAATCTTATGAACTTGGAGCTAAGTTGTTGCGGGTATCTTAGGAATCTTCCAAATGAGTTCTCATGCCTGAGATCACTTGGCCGGTTGGTACTTTCTGATTGCAGAAAACTTGACACATCAAATCTGCATTTTCTATTTGATGGCCTCCGTTCATTAGGATATCTGTGTCTAGACAATTGTGGTAACCTAACTGAACTCCCTGACAACATCAGTTTGTTATCATCATTGTATTATTTATCACTAAGTGGAAGCAATGTGGAGAACATGCCTGCAAGCATCAAACATCTTTCACAGCTAGAGTCTCTTGACTTGTGCAAATGCATGAGGCTTCAATCTTTACCAGAACTCCCACCATCCATTGAAGTGTTGGATGTCACTAATTGCACCTCCTTGGAGACAGTGCTCACCTCTCCTGTTATTGATGAACTACTACAAGAGCACAAGGTATTCATTTCATTCAAAAATTGTGTGAATTTGAGTGAATATTCCCGCAATGTTATTATGACAGATGCCCATGTCAGAATAAAGGAGGTAGCATATGTTCATGTTTCAGCCAAAATAGAAAGGAGTGACCCCTATTACTTTTTCAAATCAGAGGTGATGTCTTCTTATCATCACCCACCAACTGTTATTTACCCAGGAAGTAGAGTTCCAGAGTGGTTTCATTATCGGTCAACTAAACCATCCATCACAATTGAACTTTTACATTCTCCACAATCCAACATATGTGGTTTCATATTCTGCCTCATTCTTCCTCCATCCCCATCAAATGAAAATAATTGCAATTGGAAAATTGGATGTGAATGCTACTTGGAAAGTGGTGAAAAGATTAGAAACACAAGTATGTGCTCTTTTGCAACAGGACTGGTTTCAGATCATGTGTACTTGTGGTATGATGAAAACTTCTGTCTTGAGATGTTTAATACAATTGATGAAAATAGAATTGATGACCAGTACACCTCTTACAATCCAAAGCTTTCATTTGAATTCTTTGTTGAGACTGAGGATAAGTTGAATGTGGTCATTAAAGAGTGTGGGATCTGCCAAATAAATGGTTCAGAATATCTCAATTTTGTTGAACAATTGGGATCTGAGTTGGAGTTGGGAAATAAAATAAAGAGAGGCAGGGATATTTATGAATTAGAATCATGTGAAAGAGGCACTCAAGTTCAAGGCTTTTATGAGGAAGAAGATGAACAAGAATATTCATTTCATCAAACAAAGAAACAGAAGGTGATATTTTCTGACTCATTTCAACAAGAACCTGGAATAAGAAATTAA 3489 0.3861 MNSEKLITMADADAATEAPSSRSSTTLRENDVFISFRGEDTRSNFTSHLHAALCRNKIKTYIDYALEKGDQISEALMKAIGDSYVSVVVFSANYATSTWCLDELTYIMKCKIRDQIVVPVFYNVDPSHVRKQTGSYGNAFEKHVRDLKHMMKVNEWRNALTEAASLAGWDSRKYMLESELVDDIVQDVLRKLQYKYPSKWKGLFGINKNYARIESLLRIESREVRMIGIWGMGGIGKTTIAAVIFSNCSSQFEGFCFLENVGDESDKHGLNHVHNKLLSVLLEEANVHVGTVRAGSNFCKSRLSHKRVLIVLDDLRTPEQLDYLVGEHTCLGPGSRVIVTTRDKHVLSRADEIYEVKPLNFHESLQLFCSNAFNNVHPDVGYEQLSERVVKYADGIPLALKVLGKLFHFKSKETWESTMTKLKKIPHKEIQKILRLSYDGLDDKEKEIFLDIACFLKGEERQNVRRLLDACGFYAGAGVETLLEKSLITISNNNEIQMHSLIQEMGWEIVRQESTKDPGRRSRLCDHEEVCNVLKNNRGTDAIEGICIDVSQIRGMNLRSDIFAKMINLRFLKFYSRLGEKCNISFPAGLESLSNELRYLHWSGCPVESLPSTFCPEKLDLINLQKMDLSCSQHLIELPDFSMAINLQSINLFGCVSLSHVHPSILSLKKLVNLNMVWCKKLKSLLSNAPLRSLRILELYGCSSLEEFSVTSEEMTYLDLRNTAINELPASIKHLGNLMNLELSCCGYLRNLPNEFSCLRSLGRLVLSDCRKLDTSNLHFLFDGLRSLGYLCLDNCGNLTELPDNISLLSSLYYLSLSGSNVENMPASIKHLSQLESLDLCKCMRLQSLPELPPSIEVLDVTNCTSLETVLTSPVIDELLQEHKVFISFKNCVNLSEYSRNVIMTDAHVRIKEVAYVHVSAKIERSDPYYFFKSEVMSSYHHPPTVIYPGSRVPEWFHYRSTKPSITIELLHSPQSNICGFIFCLILPPSPSNENNCNWKIGCECYLESGEKIRNTSMCSFATGLVSDHVYLWYDENFCLEMFNTIDENRIDDQYTSYNPKLSFEFFVETEDKLNVVIKECGICQINGSEYLNFVEQLGSELELGNKIKRGRDIYELESCERGTQVQGFYEEEDEQEYSFHQTKKQKVIFSDSFQQEPGIRN. 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01491 1162 Gene3D - 359 442 IPR042197 -
Seca8g01491 1162 Gene3D - 27 192 IPR035897 -
Seca8g01491 1162 FunFam Disease resistance protein (TIR-NBS-LRR class) 360 442 - -
Seca8g01491 1162 Pfam NB-ARC domain 214 439 IPR002182 GO:0043531
Seca8g01491 1162 Pfam C-JID domain 948 1087 IPR045344 -
Seca8g01491 1162 PRINTS Disease resistance protein signature 226 241 - -
Seca8g01491 1162 PRINTS Disease resistance protein signature 302 316 - -
Seca8g01491 1162 PRINTS Disease resistance protein signature 393 407 - -
Seca8g01491 1162 PRINTS Disease resistance protein signature 689 705 - -
Seca8g01491 1162 Pfam TIR domain 31 203 IPR000157 GO:0007165
Seca8g01491 1162 Gene3D - 193 356 IPR027417 -
Seca8g01491 1162 ProSiteProfiles TIR domain profile. 28 192 IPR000157 GO:0007165
Seca8g01491 1162 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 709 IPR044974 GO:0006952
Seca8g01491 1162 FunFam Disease resistance protein (TIR-NBS-LRR class) 26 194 - -
Seca8g01491 1162 SMART till_3 29 166 IPR000157 GO:0007165
Seca8g01491 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 452 IPR027417 -
Seca8g01491 1162 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 169 IPR035897 -
Seca8g01491 1162 Gene3D Ribonuclease Inhibitor 714 904 IPR032675 -
Seca8g01491 1162 Gene3D Ribonuclease Inhibitor 543 713 IPR032675 -
Seca8g01491 1162 SUPERFAMILY L domain-like 497 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01491 Seca-Chr8 25721074 25726387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01491 19 838 WRKY Transcription Factor Family AT4G12020 35.605 4.73e-122 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01491 - - mtr:25479456 1738.39