Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01466 ATGGCATCTTCTACTGGTAGTTTAGACACCTCTGCTAACTCTTACAACAACTTCACCTTCTCTACACACCCTTTCATGACCACATCTTTTTCTGACCTTCTTGCTTCACCTACTGATGATAAGCCTCGTGGTGGTTTGTCAGATCGTATAGCTGAGAGAACTGGGTCTGGTGTCCCAAAATTCAAGTCCACACCACCCCCTTCTTTGCCTCTTTCTCCACCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGGTTGAGTCCTGCTGAACTTCTTGACTCACCAGTTCTCCTTAACCCTTCAAATGTTTTACCATCTCCAACAACTGGAGCTTTTCAAAGCTTCAATTGGAAGAGCAGTTCTGGAGGAAACCAGCAAATTGTGAAAGAAGAAGATAAAAGCTTCTCAAATTTCTCTTTTCAAACCCAACCAGGACCTCCTGTTACATCTGCAGCAACCTTTCAATCTTCAAATGTTACAAATCAAACACAACAGCCATGGAGTTTTCAGGAAGCCACAAAACAGGATAGTCTCTCTTCAGGAAAGAGTATGATGAAAACTGAAAACTCTTCTTCAATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGTTATCAATCAGATTATAGCAATTACCAACCACAACAACCTCAGACCTTAAACAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGACAAAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACATACCCCAATTGTCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTACAAGGGTACTCATAACCATCCTAAGCCTCAATCTACCAGGAGAAACTCATCATCTTCCTCTTCTCTTGCTATCCCTCCTTCAAACCACATCAGCAGTGAAATCCCAGATCAATCATACACCACCCATGGCAGTGGAATGGATTCAGTTGCCACCCCAGAGAACTCATCAATATCAATAGGGGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCAGGAGGAGATGAATTTGATGAAGATGAACCTGATGCTAAGAGATGGAAAATTGAAGGTGAAAATGAGGGTATATCAGCACCTGGGAGTAGAACAGTGAGAGAGCCAAGAGTTGTAGTTCAGACAACCAGTGACATTGATATCCTAGATGATGGGTACAGATGGAGGAAATATGGGCAGAAAGTAGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAATGTACACACCCAGGATGTCCAGTGAGGAAGCATGTAGAAAGAGCCTCACATGACCTAAGGGCTGTGATCACAACCTATGAAGGAAAGCACAACCATGATGTCCCTGCAGCACGTGGTAGTGGCAGCCATTCTGTGAACAGACCACTGCCAAACAATGCCAACCCCACCAATGCAGCCACTGCTATTAGGCCCTCAGCAGTGACCCACCACACTAACAATTCTCTTCAAAGTCTAAGACCTCAAGCACCTGAAGGGCAATCACCCTTCACCCTAGAGATGCTGCAGAACCCAGGAAATTTTGGATTCTCAGGGTTTGGGAATCCAATGGGGTCTTACATGAACCAGCAACAACTATCTGACAATGTTTTTTCCTCCAGATCAACCAAGGAGGAGCCCAGAGATGACATGTTCCTTGAATCTTTGCTATGCTGA 1716 0.433 MASSTGSLDTSANSYNNFTFSTHPFMTTSFSDLLASPTDDKPRGGLSDRIAERTGSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNPSNVLPSPTTGAFQSFNWKSSSGGNQQIVKEEDKSFSNFSFQTQPGPPVTSAATFQSSNVTNQTQQPWSFQEATKQDSLSSGKSMMKTENSSSMQSFSPEIASVQTNHSNGYQSDYSNYQPQQPQTLNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLAIPPSNHISSEIPDQSYTTHGSGMDSVATPENSSISIGDDDFEQSSQKCKSGGDEFDEDEPDAKRWKIEGENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPNNANPTNAATAIRPSAVTHHTNNSLQSLRPQAPEGQSPFTLEMLQNPGNFGFSGFGNPMGSYMNQQQLSDNVFSSRSTKEEPRDDMFLESLLC. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01466 571 ProSiteProfiles WRKY domain profile. 398 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 MobiDBLite consensus disorder prediction 347 366 - -
Seca8g01466 571 MobiDBLite consensus disorder prediction 139 237 - -
Seca8g01466 571 SUPERFAMILY WRKY DNA-binding domain 395 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 SMART WRKY_cls 403 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 MobiDBLite consensus disorder prediction 287 346 - -
Seca8g01466 571 MobiDBLite consensus disorder prediction 139 232 - -
Seca8g01466 571 FunFam WRKY transcription factor 33 390 456 - -
Seca8g01466 571 MobiDBLite consensus disorder prediction 457 518 - -
Seca8g01466 571 Gene3D WRKY domain 390 456 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 492 IPR044810 GO:0003700
Seca8g01466 571 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 Pfam WRKY DNA -binding domain 404 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 MobiDBLite consensus disorder prediction 472 518 - -
Seca8g01466 571 ProSiteProfiles WRKY domain profile. 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 FunFam WRKY transcription factor 223 292 - -
Seca8g01466 571 Gene3D WRKY domain 219 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g01466 571 MobiDBLite consensus disorder prediction 282 366 - -
Seca8g01466 571 MobiDBLite consensus disorder prediction 550 571 - -
Seca8g01466 571 Coils Coil 566 571 - -
Seca8g01466 571 MobiDBLite consensus disorder prediction 31 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01466 Seca-Chr8 25254973 25258155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01466 230 531 WRKY Transcription Factor Family AT2G38470 60.828 2.59e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g01466 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01466 K13424 - gmx:100127393 945.266