Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01464 ATGCTGTCAGGGGACATTCCTCCCAACCAGACCATTTACATTAAGAATCTCAACGAGAAGGTTAAGAAAGAAGAATTGAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGGATTTTGGACGTTGTTGCTTTAAAGACAGCCAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTCACTGCTGCCAGCAATGCAGTGCGACAAATGCAGAACTTCCCATTTTATGACAAACCTATGCGAATTCAATATGCAAAATCAAAATCAGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAAGAAGCTCAGCAATCTTCTATGGCTAATGGAGCACATGGTGCAAGTAATGGTGGCCCAACACAGGCCTCATTCCGTCCTGGACCTGGTGCCCAAGAAGCAGCACCGCCTAACAATATTTTGTTCATAGAGAATTTGCCTTATGAAACAACCGGTAGGATGCTTGAAATGCTGTTCGAACAATACCCAGGTTTTAAGGAAGTGCGTTTGATTGAAGCAAAGCCAGGGATCGCATTCGTAGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTTCAAGGCTTCAAAATCACCCCTCAGAATCCCATGATTATAACCTTTGCTAAGAAGTAG 702 0.4288 MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTAKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSSMANGAHGASNGGPTQASFRPGPGAQEAAPPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01464 233 Gene3D - 150 233 IPR012677 -
Seca8g01464 233 Gene3D - 4 118 IPR012677 -
Seca8g01464 233 SUPERFAMILY RNA-binding domain, RBD 8 222 IPR035979 GO:0003676
Seca8g01464 233 CDD RRM1_U1A_like 11 88 - -
Seca8g01464 233 FunFam U2 small nuclear ribonucleoprotein B'' 150 233 - -
Seca8g01464 233 Coils Coil 104 126 - -
Seca8g01464 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 90 - -
Seca8g01464 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Seca8g01464 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Seca8g01464 233 MobiDBLite consensus disorder prediction 98 156 - -
Seca8g01464 233 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Seca8g01464 233 SMART rrm1_1 11 85 IPR000504 GO:0003723
Seca8g01464 233 SMART rrm1_1 160 229 IPR000504 GO:0003723
Seca8g01464 233 CDD RRM2_U1A_like 157 229 - -
Seca8g01464 233 MobiDBLite consensus disorder prediction 124 143 - -
Seca8g01464 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 233 IPR000504 GO:0003723
Seca8g01464 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Seca8g01464 233 MobiDBLite consensus disorder prediction 98 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01464 Seca-Chr8 25176504 25181258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01464 3 233 Eukaryotic Initiation Factors Gene Family AT1G71770 21.519 9.51e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01464 K11094 - gmx:100805822 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01464 8 25176504 25181258 Seca8g01464 8 25176504 25181258 ECH