Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01443 ATGGAATCCCATGACGGAGTTCATGCTGCCACACTACTTCAAGCTCAAGGTCACATATGGAATCACATTTTCAGCTTCATAAAATCCATGTCCCTTAAATGCGTAGTTGACTTAGGCATACCAGATGTCATACACAACTATGGCCAACCCATGCCACTTTCTCAACTCATTGCTTCACTACCAATCCACCCATCCAAAACCCATTTCATCTATCGCTTGATGCGAATCATGACCCATTCTGGCTTCTTCACTCAACAAAATGTCACTGAGAATGAGCTAGAAGTGAAGTATGTTCTAACTGATGCATCTCTACTACTGCTTAAGAACCATCCTTTGAGTGTGAAACCTTTCTTACTTGCCATGCTTGATCCAATTTTAACAAACCCATGGCATCATTTTTCTTCTTGGTTCAAGAATGATGACCTTACACCATTTGAAACAACACACAAGGTGTTGTTTTGGGATTATGCTGGCAATGATCCCAAACTCAACAACCTATTCAATGATGGCATGGCAAGTGATGCTCGATTGGTGACTAGTGTGGTGATGGAGAAATGCAAGTGGGTGTTCAATGGATTGGAGTCATTGGTTGATGTTGGGGGAGGCACGGGGACTATGGCAAAGGCCATTGCTAAATCATTCCCAAAGATGGAGTGCATTGTATTTGATTTGCCACATGTTGTTGCTGGCTTGGAAGGAAGTGAGAACCTAAAATATGTTGATGGGGACATGTTTAAGGCAATCCCTCCAGCTGATGCCATTTTGTTGAAGTGGATATTACATGACTGGAGTGATGAGAAATGTATAAACATATTGAAGAAATGTAAAGAAGCAATCACAAGCAAAGGTAAAAAAGGAAAAGTGATTATCATAGACATGGTGATGGAGAATGAGAAGGGAGATGAAGAATCTGTTGAACCACAACTCTCCTTTGATATGTTGATGATGACATTGGTCGCTGGAAAGGAGAGAAATAAAAAAGAATGGGTTAAGTTGATTTCCTCCGCCGGTTTTAAAGATTTCAAGATAACTCCAGTTTTGGGATCAAGGTCTCTCATTGAGATTTATCCATAA 1074 0.406 MESHDGVHAATLLQAQGHIWNHIFSFIKSMSLKCVVDLGIPDVIHNYGQPMPLSQLIASLPIHPSKTHFIYRLMRIMTHSGFFTQQNVTENELEVKYVLTDASLLLLKNHPLSVKPFLLAMLDPILTNPWHHFSSWFKNDDLTPFETTHKVLFWDYAGNDPKLNNLFNDGMASDARLVTSVVMEKCKWVFNGLESLVDVGGGTGTMAKAIAKSFPKMECIVFDLPHVVAGLEGSENLKYVDGDMFKAIPPADAILLKWILHDWSDEKCINILKKCKEAITSKGKKGKVIIIDMVMENEKGDEESVEPQLSFDMLMMTLVAGKERNKKEWVKLISSAGFKDFKITPVLGSRSLIEIYP. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01443 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Seca8g01443 357 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Seca8g01443 357 Gene3D - 2 106 IPR036388 -
Seca8g01443 357 FunFam O-methyltransferase ZRP4 108 357 - -
Seca8g01443 357 PANTHER O-METHYLTRANSFERASE 13 340 IPR016461 GO:0008168
Seca8g01443 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Seca8g01443 357 Pfam O-methyltransferase domain 130 339 IPR001077 GO:0008171
Seca8g01443 357 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Seca8g01443 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Seca8g01443 357 SUPERFAMILY "Winged helix" DNA-binding domain 11 111 IPR036390 -
Seca8g01443 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 355 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01443 Seca-Chr8 24700413 24702132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01443 30 355 Monolignol Biosynthesis Gene Families AT5G54160 32.024 1.25e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01443 - K16040 gmx:100781008 599.356