LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g01410	ATGGAATCCAACAAAAATGAGGATGTTGCCAAACTGCTTCGAGCTCAAACCTATATATGGAATCACATTTTTGGCTTCATAAGCTCCATGTCCCTTAAATGTATTGTTGACTTAGGCATACCAGATGCCATACACAACTATGGCCAACCCATGCCACTCTCTCAACTTATTGCTTCATTACCGATCCACCCATCCAAAACCCATCTTATCTATCGCTTGATGCGAATCATGAGTCATTCTGGCTTCTTCTCTCAAAAAACTTTTACTGAGAATGAGCTAGAAGTGAAGTTAAAAAATGATGATCTGACAACATTTCAAACAACACACGGGATGTCGTTTTGGGAGTATGCCAATCGCAAGCCGATATATAATAACTTATTCAATGATGGCATGGAAAGTGATGCTCGATTAGTCATTAGTGTGGTGATGGAGAAGTGCAATGAGGTATTTAATGGAGTGGTGTCATTAGTTGATGTTGGAGGAGGCACAGGGACTATGGCAAAGGTCATTGCTAAATCATTCCCAAAGATGGTGTGCATTGTATTTGATCTGCCACATGTTGTTACTGGCTTGGAAGGAAGTGAGAACCTAAAATATGTTAGTGGGGACATGTTTAAGGCAATTCCTCCTGCAGACACCATTCTATTAAAGTGGATAATGCATGAATGGAATGATGAGGAATGTTTGAAGATATTGAAGAAATGCAAGGAAGCGATGAAGATAAAAGGCAAAGAAGGGAAGGTGATTATCATAGACATGGTGATGGATAATGGGATGGAAGACGATGAATCAGTTGAATTGAAACACAACTTTTCTTTGATATGA	825	0.3939	MESNKNEDVAKLLRAQTYIWNHIFGFISSMSLKCIVDLGIPDAIHNYGQPMPLSQLIASLPIHPSKTHLIYRLMRIMSHSGFFSQKTFTENELEVKLKNDDLTTFQTTHGMSFWEYANRKPIYNNLFNDGMESDARLVISVVMEKCNEVFNGVVSLVDVGGGTGTMAKVIAKSFPKMVCIVFDLPHVVTGLEGSENLKYVSGDMFKAIPPADTILLKWIMHEWNDEECLKILKKCKEAMKIKGKEGKVIIIDMVMDNGMEDDESVELKHNFSLI.	275

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g01410	274	Gene3D	-	1	110	IPR036388	-
	Seca8g01410	274	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	99	267	IPR029063	-
	Seca8g01410	274	PANTHER	O-METHYLTRANSFERASE	24	274	IPR016461	GO:0008168
	Seca8g01410	274	CDD	AdoMet_MTases	156	255	-	-
	Seca8g01410	274	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	1	274	IPR016461	GO:0008168
	Seca8g01410	274	FunFam	Coniferyl alcohol 9-O-methyltransferase	2	104	-	-
	Seca8g01410	274	Pfam	O-methyltransferase domain	98	267	IPR001077	GO:0008171
	Seca8g01410	274	Gene3D	Vaccinia Virus protein VP39	112	274	IPR029063	-
	Seca8g01410	274	SUPERFAMILY	"Winged helix" DNA-binding domain	11	86	IPR036390	-
	Seca8g01410	274	Pfam	Dimerisation domain	30	77	IPR012967	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g01410	Seca-Chr8	23774508	23776031	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g01410	30	255	Monolignol Biosynthesis Gene Families	AT5G54160	28.625	3.94e-36	130

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g01410	-		K16040	gmx:100781008	386.341

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